Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I07
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61380.1 68416.m06869 expressed protein                             30   1.5  
At2g05755.1 68415.m00619 integral membrane family protein contai...    30   2.0  
At1g51900.1 68414.m05850 hypothetical protein                          29   3.4  
At2g19330.1 68415.m02255 leucine-rich repeat family protein cont...    29   4.5  
At4g13030.2 68417.m02034 expressed protein                             28   6.0  
At4g13030.1 68417.m02033 expressed protein                             28   6.0  
At5g24630.1 68418.m02909 expressed protein  ; expression support...    28   7.9  

>At3g61380.1 68416.m06869 expressed protein
          Length = 718

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 326 IYSVTQTLKNEEILLINDVASVQPDTLEATTKKSEPSLTVVLPYTPRDGSSLQELYTRPP 505
           + +++QT +  EIL   + +S   D ++  + K + +L  +    PRD  +  E      
Sbjct: 361 VSTLSQTTEQPEILQTPETSSATNDLIDEDSDKDDDTLFTIDVSVPRDYGNETENIDNDE 420

Query: 506 RVEIVPASE 532
             EI P SE
Sbjct: 421 ESEIDPLSE 429


>At2g05755.1 68415.m00619 integral membrane family protein contains
           Pfam PF00892: Integral membrane protein domain
          Length = 401

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +2

Query: 110 VAESAVDIEKTVKQVQNI-LQSHSELPRLTREEIIQLMN 223
           +A+  + +E TV+ +++  L+S S  P L+ +EII L+N
Sbjct: 10  IADEHLSLELTVRDLESTALESASSAPELSSDEIIPLLN 48


>At1g51900.1 68414.m05850 hypothetical protein
          Length = 774

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 305 YSTSDNEIYSVTQTLKNEEILLINDVASVQPDTLEATTKKSEPSLTVVLP-YTP 463
           Y  S NE+Y  + T   EEI+  + +  V+   L+   KKS   L +  P Y P
Sbjct: 370 YEESPNEVYKFSLTDLEEEIMENDSIEGVKCRMLDEIMKKSGHHLKISRPEYKP 423


>At2g19330.1 68415.m02255 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 380

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 422 SLSLPQVCLAELKPHHLSIKFPHFLTSALLNI 327
           SL+L Q+C  +L  +HL    P  LT+ LLN+
Sbjct: 79  SLNLAQICKLDLSNNHLQ-TIPESLTARLLNL 109


>At4g13030.2 68417.m02034 expressed protein 
          Length = 479

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 128 DIEKTVKQVQNILQSHSELPRLTREEIIQLMNDI 229
           D+ +  K  Q ILQSH  L R ++ ++ Q  N+I
Sbjct: 50  DLRRREKAYQEILQSHDLLLRTSKRKLRQARNEI 83


>At4g13030.1 68417.m02033 expressed protein 
          Length = 481

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 128 DIEKTVKQVQNILQSHSELPRLTREEIIQLMNDI 229
           D+ +  K  Q ILQSH  L R ++ ++ Q  N+I
Sbjct: 52  DLRRREKAYQEILQSHDLLLRTSKRKLRQARNEI 85


>At5g24630.1 68418.m02909 expressed protein  ; expression supported
           by MPSS
          Length = 531

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 428 HFSLSLPQVCLAELKPHHLSIKFPH 354
           HF+LS  ++  + L+P  + + FPH
Sbjct: 58  HFNLSAGEIIASSLRPQSIQMPFPH 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,186
Number of Sequences: 28952
Number of extensions: 265231
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)