Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I06
         (620 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.3  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 486 PSPPRVKSFPTAVPV*PRQNL 424
           P PP + S P  V   P+Q L
Sbjct: 238 PHPPHLSSHPAIVTPGPKQEL 258


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 486 PSPPRVKSFPTAVPV*PRQNL 424
           P PP + S P  V   P+Q L
Sbjct: 130 PHPPHLSSHPAIVTPGPKQEL 150


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 589 PYIQVLLNIWIPIT 548
           P IQ  +NIW P+T
Sbjct: 523 PRIQAEVNIWNPLT 536



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 486 PSPPRVKSFPTAV 448
           P PPRV+SF   V
Sbjct: 734 PPPPRVESFAETV 746


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 500 VDVVLLITNSLHPEDGSNWNP 562
           + VVL +    H  +G NW P
Sbjct: 321 IRVVLEVDTPAHAGNGWNWGP 341


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,589
Number of Sequences: 336
Number of extensions: 3345
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)