Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I06
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   1.7  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    27   2.9  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   3.8  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.8  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    25   6.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   8.8  

>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 292 FALNFSFLNLIISDTSKFDATMACGLPGGVI 200
           F++N S   +I    S  D T+ACG  GG++
Sbjct: 118 FSINESPYPIIAVSQSPIDKTIACGFGGGLV 148


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 540 SGCRLLVINNTTSTIHQIPSPPRVKSFPTAVP 445
           SG   LV   T  T+H     P   SFP+A+P
Sbjct: 25  SGAEDLVNTLTAHTVHPSTELPSATSFPSALP 56


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 307 NSIQGFALNFSFLNLIISDTSKFDATMACGLPGGVIPFMVD 185
           N+ +GF L  S      SD  K  ++    LP   IPF VD
Sbjct: 104 NTSKGFHLQSSDKKYADSDRPKLSSSSLLSLPDQKIPFPVD 144


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 45  SHSLVSHRVSFRQNLXALQFQKHHIGHSVL*LNVH 149
           SH+LV   VS   N  +  F K H+G S + + ++
Sbjct: 80  SHNLVLDNVSSESNKTSAVFCKRHVGSSQVVIKIY 114


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 15  SHGTAHKVNSSHSLVSHRVSFRQNLXALQF 104
           SH T H+  S H+L+S   S  +N+ A  F
Sbjct: 170 SHYTGHRSRSGHTLMSQLKSKGRNVMATLF 199


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 216  KPQAMVASNLEVSDMIKLRKLKFSAKPWMELNVMAVEAFRVTVSRVCDTLDITLR 380
            KP  +V SN++ + ++ L KL  +   W+  ++     F   +      +DI  R
Sbjct: 1236 KPNRLVPSNVKSNILVLLCKLLPTNTKWLHASISQTNDFDTIMHLYTSMVDIKAR 1290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,779
Number of Sequences: 5004
Number of extensions: 52729
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)