Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I06
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    28   5.2  
07_03_0254 + 15857809-15858018,15858151-15858264,15859809-158600...    28   5.2  
10_08_0096 - 14765789-14766994                                         27   9.1  
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    27   9.1  

>12_02_0800 +
           23299674-23299678,23299714-23299791,23299876-23299920,
           23300052-23300415,23300493-23300574,23300793-23300873,
           23300974-23302106,23302202-23302350,23302426-23302516,
           23303628-23305940
          Length = 1446

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +2

Query: 113 PYRPLGPLVKCSYLPLEFLACXXPIDHKGNHTARQATGHG 232
           PYRPLGP       P+E  A            ARQ  GHG
Sbjct: 298 PYRPLGP--PGGGFPVEPFAYYGQFQPSSEAAARQGPGHG 335


>07_03_0254 +
           15857809-15858018,15858151-15858264,15859809-15860010,
           15860245-15860319,15860406-15860498,15860554-15860636,
           15861067-15861180,15861632-15861746,15861840-15862030,
           15862102-15862218,15862514-15862594,15862729-15862964,
           15863219-15863258,15863393-15863968
          Length = 748

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 158 LEFLACXXPIDHKGNHTARQATGHGCVKFGGVRYDQVEKAKVQCK 292
           L +  C   + ++    A   T    V F  V++ Q+ K KVQCK
Sbjct: 375 LSYSTCAEQLLYEVGDPANYITPDLVVDFRDVKFQQISKDKVQCK 419


>10_08_0096 - 14765789-14766994
          Length = 401

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 537 GCRLLVINNTTSTIHQIPSPPRVKS 463
           G  LLVINN T T   IP+  R+KS
Sbjct: 30  GYHLLVINNYTRTKQAIPNGFRIKS 54


>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +2

Query: 416 GMDRFCLGQXXXXXXXXXXXXXXXIWWIVDVVLLITNSLHPEDGSNWNP 562
           G+DRFC+                   WI    ++I N+  P   S+W+P
Sbjct: 435 GIDRFCVFSPVLEDLKSEGIIHFRKHWIKGEPVVIRNAFEPSLSSSWDP 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,095,106
Number of Sequences: 37544
Number of extensions: 359300
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)