Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I06
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)             108   4e-24
SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)                   30   1.7  
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)             29   3.0  
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      28   5.3  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)                 28   7.0  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score =  108 bits (259), Expect = 4e-24
 Identities = 46/86 (53%), Positives = 59/86 (68%)
 Frame = +2

Query: 116 YRPLGPLVKCSYLPLEFLACXXPIDHKGNHTARQATGHGCVKFGGVRYDQVEKAKVQCKA 295
           + P GPLV C YLPL+FL C  P+D KGN +A++  G+GCVKFGG RYD+VE+ +V C  
Sbjct: 45  FDPRGPLVDCQYLPLDFLDCEQPLDLKGNSSAKKEQGYGCVKFGGSRYDEVERTRVWCTV 104

Query: 296 LDGIECYGSRSFPRDGFPCVRYSGHY 373
           LDGIECYG R F  +  P   ++  Y
Sbjct: 105 LDGIECYGERRFLAEKCPVSSHALEY 130


>SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)
          Length = 362

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 269 EKAKVQCKALDGIECYGSRSFPRDGFPCVRY 361
           ++  V CKALD ++C G R+F +  F C RY
Sbjct: 72  KEVSVSCKALDFVDCKGPRNFTKT-FSC-RY 100


>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 495 HQIPSPPRVKSFPTAVPV*PRQNLSIPR 412
           + +PSPP++K  P  VPV  RQ   I R
Sbjct: 478 YPVPSPPQIKPMPYPVPVPVRQPPMIQR 505


>SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)
          Length = 215

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 215 QATGHGCVKFGGVRYDQVEKAKVQCKALDGIECYGSRSFPRDGFPCV 355
           +A GH  V    +    +E  K   + L G+  +  R    DGFPCV
Sbjct: 84  RARGHNVVAAFALLCSHIEFHKNNPELLKGLNAFELRYILEDGFPCV 130


>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +1

Query: 1   LXLGALMALLTKSTAVTVL--FLTGSHSGKIXKRSNFKSTISATRSFS*MFISTAGIPSL 174
           + L  L  L+TK  AV+     LT   S     RS+  ST++ + S      S++GI S 
Sbjct: 91  VTLPVLPPLITKYAAVSTAGHSLTTGDSKVFTSRSHASSTVAQSSSTVMTASSSSGIGSK 150

Query: 175 XRTYRP*RE--SHRPASH 222
            + +RP  E  S +  SH
Sbjct: 151 HKQHRPHEEGSSKKHKSH 168


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 15  SHGTAHKVNSSHSLVSHRVSFRQNLXALQFQKHHIGHSVL*LNVHIYRWN 164
           SH  A KV +SH+   ++ SFR        Q+ H  H    L   +++ N
Sbjct: 190 SHSGAKKVGNSHTETRNKTSFRDRRGKQSNQRGHQRHHSYGLRQGVHQGN 239


>SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)
          Length = 333

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 355 HTRETVTRKASTAITFNSIQGFALNFSFLNLIISDTSKFDATMACGLPGGVIPFMV 188
           H     TR+    I FN    F++ F+ LN  I  TS     +AC     VIP  +
Sbjct: 127 HNDIITTRRCLMVIIFN--WAFSILFASLNFYIPPTSMTSLWIACAFITVVIPLTI 180


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 195  KGITPPGKPQAMVASNLEVSDMIKLRKLKFSAKPWMELNVMAVE 326
            +G  PP     + A + +VSD +  + ++ +AK W+ LN  + E
Sbjct: 1086 EGKVPPEARYKIPAYDPDVSDKLTFKVMEGNAKEWVTLNATSGE 1129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,424,775
Number of Sequences: 59808
Number of extensions: 413708
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)