Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I06
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P...    29   2.5  
At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    29   3.3  
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ...    28   5.7  

>At3g02530.1 68416.m00241 chaperonin, putative similar to
           SWISS-PROT:P80317- T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 466 KFPHSCSCLTKTKSIHT*ES*QDAINQGGRKV 371
           K PHSC+ L K  + HT    +DA+  G R V
Sbjct: 370 KNPHSCTILIKGPNDHTIAQIKDAVRDGLRSV 401


>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 552 LLPSSGCRLLVINNTTSTIHQIPSPPRVKSFP 457
           LL  S   +LV+ NTT  +H   S  RV  FP
Sbjct: 3   LLKQSSAAVLVVGNTTPVLHTSRSTYRVGPFP 34


>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
           carotenoid isomerase from Lycopersicon esculentum
           [gi:19550437]; contains Pfam profile: PF02032 Phytoene
           dehydrogenase related enzyme
          Length = 595

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 293 ALDGIECYGSRSFPRDGFPCVRYSG 367
           A+DG+ C G   FP  G   V +SG
Sbjct: 536 AIDGLYCVGDSCFPGQGVIAVAFSG 560


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,580,572
Number of Sequences: 28952
Number of extensions: 284260
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)