Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_I05
(742 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7) 30 2.3
SB_54077| Best HMM Match : SRF-TF (HMM E-Value=4.4) 29 3.0
SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5) 29 3.0
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_42747| Best HMM Match : Sugar_tr (HMM E-Value=0.23) 28 9.1
SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3) 28 9.1
>SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 31.9 bits (69), Expect = 0.56
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +1
Query: 457 VLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRI---IFQKRDSVEVE 627
+LS+ + D + L HF K + I EQ QR LK + +KRI QK D ++
Sbjct: 155 ILSWNRADSL--LYDHFNKTLWAKIKEQGAPFQRELKIFRRINKRISNQCLQKGDYLDEA 212
Query: 628 YIFTTEKKSSLQRQRFNSLPVSEVPELLKNEFIXVE 735
Y K SL++ +L + + +NE V+
Sbjct: 213 YTGVYVKGYSLKQDLPGAL-LKRCESMKRNEISYVK 247
>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +1
Query: 166 KSYCFFLFTESLTNLIFGSLLNYFKIIL----DILEFVRALNIRQFHPQTQHKRRGR 324
K+Y F + +T+ ++LN I+L + FVR LN+ F T+H+R+ +
Sbjct: 304 KAYHPFRWVRYITHSFTSTILNSQSIVLFKTNNFASFVRQLNLYGFRKVTEHRRKNQ 360
>SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 221 VYLIISKLFWTFWSLYGHSTSDSSTLKHNTSGGAD*I----LALPRKSQNSQQISFILTA 388
+YL++ +F +S + + DSSTL H T A + L S NS I IL A
Sbjct: 786 IYLMVFLIFVILFSYFIITERDSSTLYHPTHPNASALEKQYLEKRPSSTNSITIVLILFA 845
Query: 389 TINF 400
TI F
Sbjct: 846 TIEF 849
>SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)
Length = 210
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +1
Query: 502 HFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFNS 681
H T I HP+ + + ++ET KR+ S Y FT+EK S N
Sbjct: 16 HATTHIKHPLLSKKEYCPEFGDTIKETTKRL------SSSSFYYFTSEKNSWYPNPE-ND 68
Query: 682 LPVSEVPEL 708
+P+S +P +
Sbjct: 69 IPLSTLPSI 77
>SB_54077| Best HMM Match : SRF-TF (HMM E-Value=4.4)
Length = 344
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = +1
Query: 430 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPI--TEQSPSIQRYLKNLQET------- 582
+TK+ +L + + K L KH ++ + TE++ + ++ ++L E
Sbjct: 160 LTKHSHDLLEVQVIFTREKKLLTKHSRDLLEVQVIFTEENKLLTKHSRDLLEVQVIFTEE 219
Query: 583 HKRIIFQKRDSVEVEYIFTTEKKSSLQRQR 672
+K + RD +EV+ IFT EKK + R
Sbjct: 220 NKLLTKHSRDMLEVQVIFTREKKLLTKHSR 249
>SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5)
Length = 311
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = +1
Query: 430 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPI--TEQSPSIQRYLKNLQET------- 582
+TK+ +L + + K L KH ++ + TE++ + ++ ++L E
Sbjct: 163 LTKHSHDLLEVQVIFTREKKLLTKHSRDLLEVQVIFTEENKLLTKHSRDLLEVQVIFTEE 222
Query: 583 HKRIIFQKRDSVEVEYIFTTEKKSSLQRQR 672
+K + RD +EV+ IFT EKK + R
Sbjct: 223 NKLLTKHSRDMLEVQVIFTREKKLLTKHSR 252
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 735 FDXYEFVFQQFGNFAHR*TVKPLPLQATFLLSRKNVFNFDA 613
FD + GNF+HR TVK LP ++S++ + F++
Sbjct: 1147 FDKFNNFVSGIGNFSHRYTVKHLPDTEENMMSQRVLGPFES 1187
>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 529 ITEQSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFNSLPVSEVPEL 708
+ ++P Q ++ + E K + F+K + E TEKK ++ RF+ + +V EL
Sbjct: 352 LVHENPGQQETVETVGEEIKEVDFEKEEIAENSSADVTEKKQ--RKFRFSKKKIQKVQEL 409
>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 550 IQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFNSLPVSEVPEL 708
I+R + N ++ K + KRD ++E ++K S + + + PV++ P L
Sbjct: 280 IRRGIINARDPKKHCFWFKRDITDLEENINSQKAGSFIDKTWGTPPVADTPAL 332
>SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 243 YFGHFGVCTGTQHQTVPPSNTTQAEGQTESWHYQ 344
YF FG G + + +P SN ++ GQT W Y+
Sbjct: 63 YFSVFGEIEGLRAE-IPRSNKSRRTGQTLYWEYK 95
>SB_42747| Best HMM Match : Sugar_tr (HMM E-Value=0.23)
Length = 527
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 RPADAVKLRLSCRETNILSYHARTLKLHQQSTLKCTKSRQTDLEMQLYFYFFLS*KSYCF 180
+PAD VKLR E + H L T + + Y +F + + F
Sbjct: 191 KPADPVKLRALLEEVRACQLAKEVKERHTPVDLYRTPKMRKWTAILSYNWFVTNLLTQAF 250
Query: 181 FLFTESLT-NLIFGSLL 228
+LF SL N+ +LL
Sbjct: 251 YLFITSLAGNMYLNTLL 267
>SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)
Length = 598
Score = 27.9 bits (59), Expect = 9.1
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = +1
Query: 430 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPI--TEQSPSIQRYLKNLQE-----THK 588
+TK+ +L + ++K L KH ++ + T++ + ++ +L E T K
Sbjct: 408 LTKHSHDLLEVQVIFTKEMKLLTKHSRDMLEVQVIFTKKRKLLTKHSHDLLEVQVIFTKK 467
Query: 589 RIIFQK--RDSVEVEYIFTTEKKSSLQRQR 672
R + K RD +EV+ IFT E+K + R
Sbjct: 468 RKLLTKHSRDMLEVQVIFTKERKLLTKHSR 497
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,822,005
Number of Sequences: 59808
Number of extensions: 362218
Number of successful extensions: 1229
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -