Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_I05
(742 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g06510.2 68415.m00722 replication protein, putative similar t... 32 0.46
At2g06510.1 68415.m00721 replication protein, putative similar t... 32 0.46
At3g13360.1 68416.m01681 expressed protein 29 2.4
At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / proly... 29 3.2
At4g23690.1 68417.m03410 disease resistance-responsive family pr... 28 5.7
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 28 5.7
At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 28 5.7
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s... 28 7.5
At3g07330.1 68416.m00874 glycosyl transferase family 2 protein s... 28 7.5
At1g16180.1 68414.m01938 TMS membrane family protein / tumour di... 28 7.5
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 28 7.5
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 27 9.9
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 27 9.9
>At2g06510.2 68415.m00722 replication protein, putative similar to
replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)] GI:13536993; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain
Length = 617
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 463 SFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDS 615
SFR + D++ + + +T +PS+ KN ETH+RI+ K +S
Sbjct: 293 SFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDES 343
>At2g06510.1 68415.m00721 replication protein, putative similar to
replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)] GI:13536993; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain
Length = 640
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 463 SFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDS 615
SFR + D++ + + +T +PS+ KN ETH+RI+ K +S
Sbjct: 316 SFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDES 366
>At3g13360.1 68416.m01681 expressed protein
Length = 459
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 475 LDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKS 654
L + KL +H + + + IQ + E+ IFQ++ E+E++ T S
Sbjct: 336 LKEKVKLLEHKLEEARAALEAKEARIQELENSKIESELECIFQRKIETEIEHLMLTRSLS 395
Query: 655 SLQ 663
SLQ
Sbjct: 396 SLQ 398
>At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / prolyl
endopeptidase, putative / post-proline cleaving enzyme,
putative similar to SP|Q9QUR6 Prolyl endopeptidase (EC
3.4.21.26) (Post-proline cleaving enzyme) {Mus
musculus}; contains Pfam profiles PF00326: prolyl
oligopeptidase family, PF02897: Prolyl oligopeptidase,
N-terminal beta-propeller domain
Length = 731
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 412 AENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHP 528
AE V++ ++ +LT K + +KL ++ TK+I+HP
Sbjct: 43 AEEVKEFVQSQVKLTDSVLEKCETKEKLRQNITKLIDHP 81
>At4g23690.1 68417.m03410 disease resistance-responsive family
protein / dirigent family protein similar to disease
resistance response protein 206-d [Pisum sativum]
gi|508844|gb|AAB18669; similar to dirigent protein
[Forsythia x intermedia] gi|6694693|gb|AAF25357
Length = 187
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1
Query: 454 TVLSFRKLDDVKKLAKHFT 510
TVLSFRK D KK KHF+
Sbjct: 26 TVLSFRKTIDQKKPCKHFS 44
>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 397 FRVEMAENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQ 576
F EMAE VED + +S L +S V+ L K ++S + + L+NLQ
Sbjct: 1046 FGSEMAEEVEDFVETVSSLREISTGLKRKVETLEKKL-----EGKEKESQGLNKMLENLQ 1100
Query: 577 E 579
E
Sbjct: 1101 E 1101
>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
Length = 897
Score = 28.3 bits (60), Expect = 5.7
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +1
Query: 478 DDVKKLAKHFTKII---NHPITEQSPSIQRYLKNLQETHKRII--FQKRDSVEVEYIFT- 639
D +K +AK F I I E S++ +N + ++I+ F + SV +
Sbjct: 196 DKLKGIAKLFADHIFSSKENIDENLVSLENGSENSRANFEKILSRFPELQSVFKNLLSEG 255
Query: 640 TEKKSSLQRQRFNSLPVSEVPELLKNEFI 726
T K S L+ LPV E ++LKN FI
Sbjct: 256 TLKPSDLKSMPLEELPVHEEDQVLKNLFI 284
>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 673
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 131 RCNYIFIFFFLKNLIVFFYS 190
+ N IF+FF L+ LI+ FYS
Sbjct: 456 KANLIFLFFLLRKLILPFYS 475
>At3g07330.1 68416.m00874 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 682
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 131 RCNYIFIFFFLKNLIVFFYS 190
+ N IF+FF L+ LI+ FYS
Sbjct: 478 KANMIFLFFLLRKLILPFYS 497
>At1g16180.1 68414.m01938 TMS membrane family protein / tumour
differentially expressed (TDE) family protein contains
Pfam domain, PF03348: TMS membrane protein/tumour
differentially expressed protein (TDE)
Length = 412
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 116 LDFVHFNVDCWCNFNVRAWYDRMLV 42
LDFVH D W ++ + WY +LV
Sbjct: 161 LDFVHGWNDTWVGYDEQFWYAALLV 185
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 273 CPYKLQNVQNNFEIIK*TPKNE 208
C KLQ + N+ E+IK PK+E
Sbjct: 466 CLMKLQQISNHLELIKPNPKDE 487
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 247 LDILEFVRALNIRQFHPQTQHKRR 318
+D+L + R L + + HPQ QH R
Sbjct: 373 MDLLAYERQLALAKMHPQAQHSLR 396
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 247 LDILEFVRALNIRQFHPQTQHKRR 318
+D+L + R L + + HPQ QH R
Sbjct: 369 MDLLAYERQLALAKMHPQAQHSLR 392
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,819,127
Number of Sequences: 28952
Number of extensions: 256323
Number of successful extensions: 791
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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