Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_I04
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 29 1.4
SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17) 29 2.4
SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6) 28 4.2
SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40) 28 4.2
SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59) 27 9.6
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -3
Query: 369 LNSVIYCTILHKLIVDDFHAC-WLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRL 199
++SV C +H + V C + + SSLW F E+ G RC S +FVT +RL
Sbjct: 314 MSSVRGCRYVHNVRVSLCTLCAFRYVHSSLW--FSELFGKRFGTRCRSCDKFVTERRL 369
>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
Length = 321
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 270 LEVCRSSVGPRCDSDVRFVTFQRLCSK 190
L C SSV PR D+D R +TF+ C K
Sbjct: 291 LNHCTSSVPPRFDND-RQITFKEACKK 316
>SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)
Length = 190
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 270 LEVCRSSVGPRCDSDVRFVTFQRLCSK 190
L C SSV PR D+D R +TF C K
Sbjct: 160 LNHCTSSVPPRFDND-RQITFTEACKK 185
>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 270 LEVCRSSVGPRCDSDVRFVTFQRLCSK 190
L C SSV PR D+D R +TF C K
Sbjct: 507 LNHCTSSVPPRFDND-RQITFTEACKK 532
>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
Length = 440
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = -3
Query: 369 LNSVIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVG 244
L VI+ T+++ D+ + +L+IP +W + + + + G
Sbjct: 333 LGVVIFATVIYYCEKDELNTSFLSIPDGMWYAIVTMTTTGYG 374
>SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 190 FRAEALKRDESHVRVTPWANGRPAH 264
FR L +S VR +PWA RPA+
Sbjct: 105 FRGPPLFAPKSRVRASPWACTRPAY 129
>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 312 ACWLTIPSSLWNSFLEVCRSSVGPRC 235
AC+L IP ++ N ++ C++ V +C
Sbjct: 69 ACYLDIPGNMVNEEVQACKAKVFSQC 94
>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 270 LEVCRSSVGPRCDSDVRFVTFQRLCS 193
L C SSV PR D+D R +TF+ C+
Sbjct: 225 LNHCTSSVPPRFDND-RQITFKEACA 249
>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1013
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 190 FRAEALKRDESHVRVTPWANGRPAH 264
F A L +S VR +PWA RPA+
Sbjct: 832 FAAPPLFAPKSRVRASPWACTRPAY 856
>SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/59 (18%), Positives = 28/59 (47%)
Frame = +1
Query: 49 RXISIXFLXIKVNXHINKMXAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESH 225
+ ++ F+ + + + + R +TY N+S+ A+ + + Q+ R E ++ H
Sbjct: 327 QTVASGFIANRAHLTSRRAHSSRAKSVTYANFSSTEARRAKTTSSQDIRTEQIQASRYH 385
>SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)
Length = 483
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 190 FRAEALKRDESHVRVTPWANGRPAH 264
F A L +S VR +PWA RPA+
Sbjct: 353 FAAPPLFAPKSRVRASPWACTRPAY 377
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,046,331
Number of Sequences: 59808
Number of extensions: 169652
Number of successful extensions: 425
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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