Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I04
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondri...    64   6e-11
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    29   1.5  
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ...    27   4.5  
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    27   5.9  
At3g14710.1 68416.m01860 F-box family protein   ; similar to SKP...    27   5.9  
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera...    27   5.9  
At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera...    27   5.9  
At5g44960.1 68418.m05514 F-box family protein contains F-box dom...    27   7.8  

>At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondrial
           identical to ATP synthase epsilon chain, mitochondrial
           SP:Q96253 from [Arabidopsis thaliana]
          Length = 70

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 25/49 (51%), Positives = 37/49 (75%)
 Frame = +1

Query: 112 WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGRP 258
           WR AG+TYI+YSNI A ++R  LK+  +AEAL R++ H  ++ WA+G+P
Sbjct: 10  WRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase II SP:P27046 from [Mus
           musculus]
          Length = 1173

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 258 CTPPESCSKVKKE*LTNMHENHQLLIY 338
           C PP SCSK+  + +T +   HQ L++
Sbjct: 743 CPPPYSCSKLDND-VTEIRNEHQTLVF 768


>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
           finger domain-containing protein-related contains Pfam
           profiles PF03468: XS domain, weak hit to PF03470: XS
           zinc finger domain
          Length = 625

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 99  QNXRLEASWFNLHKLLKH-RSQGASQV 176
           QN      W+NLH LL H R++GA +V
Sbjct: 232 QNGPGAIDWYNLHPLLAHARTKGARRV 258


>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 282 WNSFLEVCRSSVGPRCDSDVRFVTFQRL 199
           WNS   +C+S VG  C SD   V   RL
Sbjct: 67  WNSTNHICKSWVGVTCTSDGTSVHALRL 94


>At3g14710.1 68416.m01860 F-box family protein   ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 442

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 211 VSTPLLEILALVTCEAPWLRCLSSLCKLNQLASK 110
           + +PLL I  +  C +  +   S +CK+  LASK
Sbjct: 219 IDSPLLRIFEMFKCTSEHVPNPSQVCKIRVLASK 252


>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glycosyltransferase family
          Length = 479

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 286 TLEQLSGGVQVVRWP 242
           TLE LSGGV +V WP
Sbjct: 381 TLESLSGGVPMVCWP 395


>At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glycosyltransferase family
          Length = 309

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 286 TLEQLSGGVQVVRWP 242
           TLE LSGGV +V WP
Sbjct: 211 TLESLSGGVPMVCWP 225


>At5g44960.1 68418.m05514 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 416

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +1

Query: 40  VEFRXISIXFLXIKVNXHINKMXAWRQAGLTYINY----SNIAAKV-LRRSLKQEFRAEA 204
           ++F  +    +      HINK+    Q+G+  +NY    S +  K+ LR S      +E+
Sbjct: 338 IDFHEVPQCLISTLEYVHINKLMMMEQSGIKLVNYFIENSAVLKKLTLRFSFFSSIESES 397

Query: 205 LKRDESHVRVTP 240
            K+  +  +++P
Sbjct: 398 YKKLLTSTKLSP 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,950,733
Number of Sequences: 28952
Number of extensions: 117537
Number of successful extensions: 309
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)