Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_I03
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 176 2e-44
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07) 80 2e-15
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23) 31 1.1
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13) 31 1.1
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 30 1.5
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 176 bits (428), Expect = 2e-44
Identities = 76/130 (58%), Positives = 99/130 (76%)
Frame = +2
Query: 197 EKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDL 376
E P ++G ++GL G HGFH+H +GDNTNGC SAG HFNP K++HGGPS RHVGDL
Sbjct: 24 EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDL 83
Query: 377 GNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGR 556
GN+ A D G + + D+ ++L G +S++GR++VVHAD DDLG GGHE SKTTG+AGGR
Sbjct: 84 GNVVA-GDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGR 142
Query: 557 IACGVIGLAK 586
+ACGVIG+ +
Sbjct: 143 LACGVIGITQ 152
>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
Length = 100
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/71 (54%), Positives = 49/71 (69%)
Frame = +2
Query: 362 HVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTG 541
HVGDLGNI A ++ T +D + + IIGR +VVHAD DDLG GGHELSK+TG
Sbjct: 1 HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56
Query: 542 NAGGRIACGVI 574
N+G R+ CG+I
Sbjct: 57 NSGARVGCGII 67
>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +2
Query: 335 HGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLV 481
HG P RH+GDLGNIEA + +G+ VSI D +SL G SIIGR+LV
Sbjct: 2 HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49
>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
Length = 710
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/93 (25%), Positives = 43/93 (46%)
Frame = +2
Query: 251 HGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQD 430
H H++ + + C + + + + HGG S++ +GN + G S+ D
Sbjct: 309 HDNHLNPSSYDNHSCLANQSSLSDNQSSHGGNHSSL-----VGNQSS---HGGNHSSLDD 360
Query: 431 SQISLHGPNSIIGRTLVVHADPDDLGLGGHELS 529
+Q SL G SI+G H + + GLG ++ S
Sbjct: 361 NQSSLGGNQSILGDNQSSHGN-EKSGLGDNQSS 392
>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
Length = 661
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 537 LVMLVAVLLVESLAWPRFKYIHFSYVGLGTTIFSDFM 647
+++++A L VE W F+ I+F ++ L T F D++
Sbjct: 366 MLLVLAALAVEYEGWTYFQGIYFGFITLSTIGFGDYV 402
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 30.3 bits (65), Expect = 1.5
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
Frame = +2
Query: 92 CYTLNIT*YNITMPAKAVCVLRGDVSGTVFFDQQDEKSP----VVVSGEVQGLTKGKHGF 259
C L T ++ + GTV F Q + + ++G + L+ H
Sbjct: 42 CVNLRFTACHVNGTTLKATFSMSGIRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDL 101
Query: 260 HVHEFGDNTNGCTSA--GAHFNPEKQDHGGPSSAVRH---VGDL-GNIEAIEDSGVTKVS 421
V G+ C + G ++P+ S+A + VGDL G I+ + ++ V
Sbjct: 102 PVIYKGNAATTCNTVALGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV- 160
Query: 422 IQDSQISLHGPNSIIGRTLVV 484
DS + L G + I GRTLV+
Sbjct: 161 FHDSNLPLTGRHGIFGRTLVL 181
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 284 TNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIED 400
T+ +SA HF+ DH P S V D+ +E+ +
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSE 3243
>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1604
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 161 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHG--FHVHEFGDNTN 289
DVSG+V +Q +S V+ V G HG F +H NT+
Sbjct: 44 DVSGSVTLEQSQSRSGPYVTVAVDGTRVVLHGAVFTIHNLTSNTD 88
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,665,708
Number of Sequences: 59808
Number of extensions: 443356
Number of successful extensions: 1079
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -