Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I03
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 544 CWWPYCLWSHWLGQDLNT 597
           CW PY + S W   D N+
Sbjct: 272 CWTPYYVMSLWYWIDRNS 289



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 593 IHTFFLCWAWYY 628
           I  FF+CW  YY
Sbjct: 266 IAVFFICWTPYY 277


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 653 KYHEVTKYCSTKPNIRKMYVFKSWPSQ*LH 564
           K HE T  C  KP   +  ++K+     LH
Sbjct: 2   KEHEATGTCQKKPTKLRNLIYKTEAFDSLH 31


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = -2

Query: 551 HQHYQWSYLAHGHPVPSHQ-GQH 486
           HQH+   Y  H    P HQ G H
Sbjct: 319 HQHHPSQYHPHRGSSPHHQHGNH 341


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 599 TFFLCWAWYY 628
           TFF+CWA ++
Sbjct: 268 TFFICWAPFH 277


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 116 YNITMPAKAVCVLRGDVSGTVFFDQQD 196
           YN+ +P K++   + DV+     D  D
Sbjct: 104 YNVAVPTKSILEKKPDVTTVELVDATD 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,619
Number of Sequences: 438
Number of extensions: 4269
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)