Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I03
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...   190   7e-49
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...   189   2e-48
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...   171   5e-43
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ...    51   6e-07
At5g59980.1 68418.m07522 RNase P subunit p30 family protein cont...    32   0.30 
At5g18330.1 68418.m02157 U-box domain-containing protein weak si...    31   0.52 
At4g04920.1 68417.m00715 expressed protein                             31   0.69 
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r...    31   0.91 
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot...    31   0.91 
At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.8  
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ...    29   3.7  
At5g01360.1 68418.m00049 expressed protein several hypothetical ...    28   4.9  
At1g47786.1 68414.m05316 acyl-protein thioesterase-related simil...    28   6.4  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    27   8.5  
At4g33900.1 68417.m04810 kelch repeat-containing F-box family pr...    27   8.5  

>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score =  190 bits (463), Expect = 7e-49
 Identities = 91/151 (60%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
 Frame = +2

Query: 134 AKAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAG 307
           AK V VL     V+GT+FF Q+ +     VSG V GL  G HGFHVH  GD TNGC S G
Sbjct: 2   AKGVAVLNSSEGVTGTIFFTQEGD-GVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 308 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVH 487
            HFNP+ + HG P  A RH GDLGNI  + D G    +I D QI L GPNSI+GR +VVH
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNI-TVGDDGTATFTITDCQIPLTGPNSIVGRAVVVH 119

Query: 488 ADPDDLGLGGHELSKTTGNAGGRIACGVIGL 580
           ADPDDLG GGHELS  TGNAGGR+ACG+IGL
Sbjct: 120 ADPDDLGKGGHELSLATGNAGGRVACGIIGL 150


>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score =  189 bits (460), Expect = 2e-48
 Identities = 91/158 (57%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
 Frame = +2

Query: 122 ITMPAKAVCVLRG--DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGC 295
           ++   KAV VL+G  DV G V   Q D+  P  V+  + GLT G HGFH+HEFGD TNGC
Sbjct: 61  VSAAKKAVAVLKGTSDVEGVVTLTQ-DDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGC 119

Query: 296 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRT 475
            S G HFNP    HG P    RH GDLGNI A  D GV + +I D+QI L GPNS++GR 
Sbjct: 120 ISTGPHFNPNNMTHGAPEDECRHAGDLGNINANAD-GVAETTIVDNQIPLTGPNSVVGRA 178

Query: 476 LVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 589
            VVH   DDLG GGHELS TTGNAGGR+ACGVIGL  +
Sbjct: 179 FVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLTPL 216


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score =  171 bits (415), Expect = 5e-43
 Identities = 82/150 (54%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
 Frame = +2

Query: 137 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 310
           +AV ++ GD  V G + F  QD      V+G++ GL+ G HGFH+H FGD TNGC S G 
Sbjct: 9   RAVALIAGDNNVRGCLQF-VQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 311 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 490
           HFNP  + HG P+   RH GDLGNI A   +GV ++ I+D  I L G  SI+GR +VVHA
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILA-GSNGVAEILIKDKHIPLSGQYSILGRAVVVHA 126

Query: 491 DPDDLGLGGHELSKTTGNAGGRIACGVIGL 580
           DPDDLG GGH+LSK+TGNAG R+ CG+IGL
Sbjct: 127 DPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156


>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
           putative similar to copper chaperone for superoxide
           dismutase [Homo sapiens] gi|2431868|gb|AAC51764
          Length = 254

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
 Frame = +2

Query: 140 AVCVLRG-DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHF 316
           AV   +G D+ G V F Q   +    +     GL+ G H + ++E+GD TNG  S G+ +
Sbjct: 98  AVAEFKGPDIFGVVRFAQVSMEL-ARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLY 156

Query: 317 NPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADP 496
           NP  QD  G       +GDLG +EA + +G    S +  ++ +     +IGR +VV+   
Sbjct: 157 NP-FQDQTG----TEPLGDLGTLEA-DKNGEAFYSGKKEKLKV---ADLIGRAVVVYKTD 207

Query: 497 DD 502
           D+
Sbjct: 208 DN 209


>At5g59980.1 68418.m07522 RNase P subunit p30 family protein
           contains Pfam PF01876: RNase P subunit p30
          Length = 581

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 296 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVS 421
           TS G   +P K DHG P S V  V ++GN    E++ V + S
Sbjct: 458 TSEGGSMSPSKSDHGIPQSPV-EVNNMGNAAFEEEASVDENS 498


>At5g18330.1 68418.m02157 U-box domain-containing protein weak
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582198; contains Pfam
           profile PF04564: U-box domain
          Length = 445

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 306 ELISTLKNKIMVVPVLLYAMSATSVTLRQLKTLESLKYQSKIPRS 440
           E I TL NKIM+ P+L+    A+  T  +   LE LK++   PR+
Sbjct: 68  EFICTLSNKIMIEPMLI----ASGQTFEKSYILEWLKHERTCPRT 108


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 649  TMKSLNIVVPSPT*EKCMYLNLGQANDSTSNTATSITSGLT*LMA-TQSQVIRVSMDN*S 473
            T  + +   P    +K +YL +GQ   +T+ TAT+ +SG + + A  Q  + ++S  N  
Sbjct: 853  TQNASSPATPQVFPDKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDG 912

Query: 472  ATNDA 458
            + + A
Sbjct: 913  SNSTA 917


>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
           response factor 30 (GI:20145855) {Arabidopsis thaliana}
          Length = 313

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 20/67 (29%), Positives = 23/67 (34%)
 Frame = +2

Query: 260 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 439
           H    G   NG +S   H +     H G SS   H    G+      SG    SI  S  
Sbjct: 89  HSSGTGSTHNGHSSGSNHSSGTGSTHNGHSSGSNHSSSTGSTHNNHSSGSNHSSIVGSTH 148

Query: 440 SLHGPNS 460
             HG  S
Sbjct: 149 KNHGSGS 155


>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
           / BED zinc finger domain-containing protein /
           transposase-related weak similarity to Tam3-transposase
           [Antirrhinum majus] GI:16064; contains Pfam profiles
           PF02892: BED zinc finger, PF05699: hAT family
           dimerisation domain
          Length = 676

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 452 PNSIIGRTLVVHADPDDLGLGGHELSKT 535
           P +++  TLV H+DP D+GLG  + S +
Sbjct: 3   PKAMMDMTLVPHSDPIDIGLGSSDKSNS 30


>At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 461

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +2

Query: 317 NPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHG------PNSII 466
           N   +++ G +  + H+G L N EA  +  +TK S  +  +S  G      PNS+I
Sbjct: 231 NDLNKENNGQNPQILHLGPLHNQEATNNITITKTSFWEEDMSCLGWLQEQNPNSVI 286


>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 463

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 479 VVHADPDDLGLGGHELSKTTGNAGGRIACGVI 574
           + H   +DL L    LSKTTG+AG R   G++
Sbjct: 270 ITHPVDEDLSL--FSLSKTTGHAGSRFGWGLV 299


>At5g01360.1 68418.m00049 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 434

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 435 WESWIDTLVTPESSIASMLPRSPT-WRTAELGPP--*SCFSGLK 313
           W +W+D+ V P  +       SPT  R+A+ G P    CF+  K
Sbjct: 298 WANWVDSTVDPNKTRVFFTTMSPTHTRSADWGKPNGTKCFNETK 341


>At1g47786.1 68414.m05316 acyl-protein thioesterase-related similar
           to hypothetical protein GB:AAD55623 GI:5903064 from
           [Arabidopsis thaliana] contains similarity to
           acyl-protein thioesterase-1 [Homo sapiens]
           gi|9965372|gb|AAG10063
          Length = 186

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 344 PSSAVRHVGDLGNIEAIEDSGVTKVS--IQDSQISLHGPNSIIGRTLVVHADPDDLGLG 514
           P++  R V  LG +E      + ++S  +QD ++SLH     I      HA P+  G+G
Sbjct: 89  PTAPRRPVTILGGMETNAWFDIAEISENMQDDEVSLHHAALSIANLFSDHASPNIGGMG 147


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 530 YLAHGHPVPSHQGQH 486
           Y +HG+P PSH G H
Sbjct: 85  YPSHGYPRPSHSGHH 99


>At4g33900.1 68417.m04810 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 379

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 186 SKKT-VPLTSPRSTQTALAGIVILYYVIFRV 97
           SKK  VP++SP  T  AL G V++ + I+ +
Sbjct: 90  SKKVLVPISSPNFTSAALPGFVVVGHEIYAI 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,503,699
Number of Sequences: 28952
Number of extensions: 310020
Number of successful extensions: 835
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)