Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I02
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444...    32   0.36 
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    30   1.1  
02_01_0660 - 4913033-4913368                                           28   5.9  
02_02_0558 + 11477433-11477525,11477632-11477973,11481854-114823...    27   7.7  

>07_01_0597 +
           4438858-4439847,4439936-4440067,4440397-4441176,
           4441359-4441646,4441710-4441808
          Length = 762

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 208 CTVAALNARRTTNVHTARFAVLIRATPSRVQSRLLTAEAPGALANTQPAERAFTVRTSSA 387
           CTVAA+  R     + A   + +         RLL A AP A A  Q  +  + V+T  +
Sbjct: 71  CTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKTLMS 130

Query: 388 TPTKY 402
           +  +Y
Sbjct: 131 SDAEY 135


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 226 NARRTTNVHTARFAVLIR-ATPSRVQSRLLTAEAPGALANTQPAERAFTVRTSSATPTK 399
           ++ RT  ++T+  +V  R  TPSR  S ++  +   A +   PA  +  V+T  +TPTK
Sbjct: 92  SSNRTAVLNTSISSVSSRPTTPSRRSSTVVAPKQSIAASRPVPARSSTPVKTRPSTPTK 150


>02_01_0660 - 4913033-4913368
          Length = 111

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 174 EAAGTCPLPSKVYGCSPKCKEDYECTH 254
           +AA   P PSK +GC+P   +D  C H
Sbjct: 40  DAAAAAPAPSKGHGCNP--LKDKTCRH 64


>02_02_0558 +
           11477433-11477525,11477632-11477973,11481854-11482381,
           11482459-11482956
          Length = 486

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 24/98 (24%), Positives = 37/98 (37%)
 Frame = +1

Query: 100 KKKQNGFNDIPXWVCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTARFAVLIR 279
           ++K  GF  +  W+ ++    +  P    R   L           RT  + T  +   + 
Sbjct: 326 QEKAGGFQWLDRWMAAQAQQHAPEPDKSRRRAALTAAADGTTMPERTVEMDTTSYRSPLN 385

Query: 280 ATPSRVQSRLLTAEAPGALANTQPAERAFTVRTSSATP 393
           +  + VQ R      PG +A TQ A RA       ATP
Sbjct: 386 SHSAAVQGR--PPAVPGYMAATQ-AARARARTAPPATP 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,178,393
Number of Sequences: 37544
Number of extensions: 243764
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)