Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I02
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50485| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)                  31   0.49 
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               31   0.85 
SB_26709| Best HMM Match : CtnDOT_TraJ (HMM E-Value=8.8)               31   0.85 
SB_37904| Best HMM Match : HemY_N (HMM E-Value=1.4)                    29   2.0  
SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)          28   6.0  
SB_25832| Best HMM Match : fn3 (HMM E-Value=4.2e-08)                   28   6.0  
SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)           27   7.9  

>SB_50485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 200 RKRARASGFGVEDKGNQREHTQXGMSLNPFCFFF 99
           + R  ++GFG+  KG  +++T  G +LNPF   F
Sbjct: 7   KHRQNSAGFGLVLKGEMKDNTAHGKNLNPFTAAF 40


>SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)
          Length = 1150

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 265 AVLIRATPSRVQSRLLTA-EAPGALANTQPAERAFTVRTSSATPTKYAS 408
           A L+R TP   QSR +T  EA GA   T  A+ A + R S  T  ++A+
Sbjct: 790 AQLVRTTPFNTQSRAVTIHEATGARITT--AQEALSSRDSGVTSPRFAT 836


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 23/98 (23%), Positives = 34/98 (34%)
 Frame = +3

Query: 150 LVTFVFYAEAAGTCPLPSKVYGCSPKCKEDYECTHGKVXXXXXXXXXXXXEPAAYGGGTG 329
           L T +    AA  C   S+   C+P C + Y+   G                     GT 
Sbjct: 4   LWTLLLAVMAASFCAKGSRPDKCAPICNKMYQPVCGS-DNVTYSNPCMLRSATCKSNGTI 62

Query: 330 SSSKHATGGTGVYCENVKCNSYEICKRDPITKRMKCSR 443
           +       G+   CE  KC   ++CK   I  + +C R
Sbjct: 63  TMKHRGKCGSSQSCEQKKCKGTKVCKM--IGNKPRCMR 98


>SB_26709| Best HMM Match : CtnDOT_TraJ (HMM E-Value=8.8)
          Length = 291

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 315 GGGTGSSSKHATGGTGVYCENVKCNS 392
           GGG+G+ S  A GG G YC    C++
Sbjct: 247 GGGSGTHSGQAGGGGGSYCGGSSCSA 272


>SB_37904| Best HMM Match : HemY_N (HMM E-Value=1.4)
          Length = 155

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 75  VEVLCSVNKKKTKWVQ*HSXLGVF-ALVTFVFY 170
           V V+  + KKKT+W   H   GVF  LVT V+Y
Sbjct: 43  VVVVMVMKKKKTRWRPKHYAPGVFDTLVTSVYY 75


>SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)
          Length = 547

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 315 GGGTGSSSKHATGGTGVYCENVKC 386
           GGG+G +   A GG G YC    C
Sbjct: 377 GGGSGITWNQAGGGGGSYCAGSSC 400


>SB_25832| Best HMM Match : fn3 (HMM E-Value=4.2e-08)
          Length = 313

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 217 AALNARRTTNVHTARFAVLIRATPSRVQSRLLTAEAPGALANTQPAERAFTVRTSSATPT 396
           ++LNA+ T        A +  ATPS   +R  +  A          E A T  +    PT
Sbjct: 166 SSLNAKLTDGYLGNLKAQVAMATPSNTGAREGSDSATVGSVGPAHGEGACTTNSDQFIPT 225

Query: 397 KYASVIQ 417
           +YA+V++
Sbjct: 226 EYAAVLE 232


>SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
          Length = 497

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 143 VRVGYLCLLRRSRWHVPSS 199
           +R GYLC +RRSR  +P S
Sbjct: 164 IRRGYLCAIRRSREQLPLS 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,476
Number of Sequences: 59808
Number of extensions: 292199
Number of successful extensions: 900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)