Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I02
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At2g26620.1 68415.m03194 glycoside hydrolase family 28 protein /...    28   4.9  
At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containi...    27   6.5  
At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein c...    27   8.6  

>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 907

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 115 GFNDIPXWVCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTARFAVLIRAT 285
           GF +    +CS+  P+SS P  +    FL   T   ++ ++   +H A    L+  T
Sbjct: 731 GFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANT 787


>At2g26620.1 68415.m03194 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
           (Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
           mays}; contains Pfam profile PF00295: Glycosyl
           hydrolases family 28 (polygalacturonases)
          Length = 402

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 197 KRARASGFGVEDKGNQREHTQXGMSLNPFCFFFVHRTQHFN 75
           K A + GF   +  N ++ T     +  F FFFVH   HFN
Sbjct: 149 KLAISMGFAFVNNSNIKDITSLNSKMGHFNFFFVH---HFN 186


>At5g48730.1 68418.m06031 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 495

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 313 TAEAPGALANTQPAERAFTVRTSSATP 393
           T+ AP    N + AER FTVR  S +P
Sbjct: 8   TSHAPPLPTNRRTAERTFTVRCISISP 34


>At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein
           contains Pfam domain PF02891: MIZ zinc finger
          Length = 703

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 498 KVNKHINYIMKSDLSLFKLCCISFSSLLDHA 406
           ++  HI    K D   F++CCISF+  +D A
Sbjct: 35  RLRYHIQDGAKVDPKEFQICCISFAKGIDFA 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,605,026
Number of Sequences: 28952
Number of extensions: 190946
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)