Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I01
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   0.73 
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   1.3  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   3.9  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   3.9  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    24   9.0  

>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 115 CLCRTLQLPATPFPTFHPYQYLP 183
           C  R +Q    PFP FH Y ++P
Sbjct: 11  CSHRVIQAKHPPFPLFHSYFHIP 33


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 200 ERRAVDGRY**G*NVGKGVAGSCSVRQRHHIRVGRR 93
           ERR V G Y  G  +G G  G   V+  HH++ G +
Sbjct: 117 ERRKVIGNYVLGKTIGAGSMG--KVKVAHHLKTGEQ 150


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 92  RGGRPVCGASAVRCNCRLPPFLRFILISTYRLQLCVHRLLP 214
           R G+ V G   V  +  L PF+     ST  L L   RL+P
Sbjct: 286 RNGKGVLGPRVVNLSTVLDPFVLSESASTLNLSLMRWRLVP 326


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 133 QLPATPFPTFHPYQYLPSTALRSPASTHKSHTQMIIS 243
           Q P +P P+  P    PSTA       H S +   +S
Sbjct: 97  QSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVS 133


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 60  FLITMLALFACAAADPYVVP 119
           + + ++++F C+ ADP ++P
Sbjct: 125 YALAVVSMFKCSTADPGILP 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,362,313
Number of Sequences: 5004
Number of extensions: 26719
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)