Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_I01
(375 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25480.1 68415.m03051 expressed protein 29 0.76
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida... 28 2.3
At2g32800.1 68415.m04015 protein kinase family protein contains ... 28 2.3
At5g13500.3 68418.m01559 expressed protein predicted protein At2... 27 4.1
At5g13500.2 68418.m01558 expressed protein predicted protein At2... 27 4.1
At5g13500.1 68418.m01557 expressed protein predicted protein At2... 27 4.1
At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e... 27 5.4
At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) / 2,3-epox... 27 5.4
At2g02955.1 68415.m00243 expressed protein ; expression supporte... 27 5.4
At5g46330.1 68418.m05703 leucine-rich repeat transmembrane prote... 26 7.1
At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar ... 26 7.1
At5g48900.1 68418.m06049 pectate lyase family protein similar to... 26 9.4
At5g23350.1 68418.m02731 GRAM domain-containing protein / ABA-re... 26 9.4
At5g10490.1 68418.m01215 mechanosensitive ion channel domain-con... 26 9.4
>At2g25480.1 68415.m03051 expressed protein
Length = 404
Score = 29.5 bits (63), Expect = 0.76
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 118 LCRTLQLPATPFPTFHPYQYLPSTALRSPAST 213
L ++L ATP PTF+ LP T L+ A T
Sbjct: 230 LRKSLNFKATPMPTFYQEPQLPKTELKKIAIT 261
>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661197]
Length = 565
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 150 LSYVSSLSVPTVYSSAFTGFYPQIAYAND 236
LSY SS T S+F+G+YP + + ND
Sbjct: 300 LSYTSSCKAKT---SSFSGYYPTLPFYND 325
>At2g32800.1 68415.m04015 protein kinase family protein contains
dual protein kinase domains, Pfam:PF00069
Length = 851
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +1
Query: 73 CWLSSPARRPTRMWCLCR-----TLQLPATPFPTFHPYQYLPSTALRSPASTHKSHT 228
C L++P RP W + + LPA P HP Y+P ++L+S +++ + T
Sbjct: 398 CSLNNPTHRPNMKWVIGALSGEFSGNLPALPSFKSHPL-YIPLSSLKSTSTSATTTT 453
>At5g13500.3 68418.m01559 expressed protein predicted protein
At2g25260 - Arabidopsis thaliana, EMBL:AC007070
Length = 358
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 108 YVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYP 215
+V PLP A G+P ++ P Y + +YP
Sbjct: 164 FVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199
>At5g13500.2 68418.m01558 expressed protein predicted protein
At2g25260 - Arabidopsis thaliana, EMBL:AC007070
Length = 358
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 108 YVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYP 215
+V PLP A G+P ++ P Y + +YP
Sbjct: 164 FVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199
>At5g13500.1 68418.m01557 expressed protein predicted protein
At2g25260 - Arabidopsis thaliana, EMBL:AC007070
Length = 358
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 108 YVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYP 215
+V PLP A G+P ++ P Y + +YP
Sbjct: 164 FVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199
>At3g45130.1 68416.m04871 cycloartenol synthase, putative /
2,3-epoxysqualene--cycloartenol cyclase, putative /
(S)-2,3-epoxysqualene mutase, putative 77% similar to
cycloartenol synthase [SP|P38605|gi:452446] [PMID:
7505443]; oxidosqualene cyclase LcOSC2 - Luffa
cylindrica, EMBL:AB033335
Length = 748
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 100 PTRMWCLCRTLQLP 141
P RMWC CR + LP
Sbjct: 251 PGRMWCHCRMVYLP 264
>At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) /
2,3-epoxysqualene--cycloartenol cyclase /
(S)-2,3-epoxysqualene mutase identical to cycloartenol
synthase [SP:P38605 | GI:452446] [PMID:7505443]
Length = 759
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 100 PTRMWCLCRTLQLP 141
P RMWC CR + LP
Sbjct: 251 PGRMWCHCRMVYLP 264
>At2g02955.1 68415.m00243 expressed protein ; expression supported
by MPSS
Length = 666
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 9 SCTVELSK*QSIKMFKAFLITMLALFACAAADPYVVPLPYAATAGYPLSYVSSLSVP 179
+C V++S + F+ ML A AD +PLP G +Y+ LS+P
Sbjct: 285 ACPVKVSI--MARPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIP 339
>At5g46330.1 68418.m05703 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1173
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 150 LSYVSSLSVPTVYSSAFTGFYPQ 218
+ ++ SL V T++S+ FTG +PQ
Sbjct: 332 IGFLESLEVLTLHSNNFTGEFPQ 354
>At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar to
beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and
GI:8918271 from [Pisum sativum]
Length = 769
Score = 26.2 bits (55), Expect = 7.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 100 PTRMWCLCRTLQLP 141
P +MWC CR + +P
Sbjct: 254 PAKMWCYCRLVYMP 267
>At5g48900.1 68418.m06049 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa];
non-consensus AG donor splice site at exon 2
Length = 417
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 38 KYQNV*GVFDHNAGSLRLRGGR 103
K ++ GV +NAG+L RGGR
Sbjct: 394 KSSSLVGVITYNAGALNCRGGR 415
>At5g23350.1 68418.m02731 GRAM domain-containing protein /
ABA-responsive protein-related contains similarity to
ABA-responsive protein in barley (GI:4103635) [Hordeum
vulgare] [J. Exp. Bot. 50, 727-728 (1999); contains Pfam
PF02893: GRAM domain
Length = 280
Score = 25.8 bits (54), Expect = 9.4
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +1
Query: 166 PYQYLPSTALRSPASTHKSHTQMIISFVNKMLK*IHTSGTSSVTINKIY 312
P++YLP+ + S TH + + SF +K T+ +S +T+++++
Sbjct: 25 PFKYLPTYTVSSSTITH--NLSLSFSFTKSRIK--ITTQSSKMTLSRVH 69
>At5g10490.1 68418.m01215 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 519
Score = 25.8 bits (54), Expect = 9.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 63 LITMLALFACAAADPYVVPLPYA-ATAGYPLSYVSSLSVPTVYSSAFTGFYPQ 218
L+ + ALF C A DP V+P + L++V SLS ++ + Q
Sbjct: 9 LLWLGALFICRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQ 61
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,945,886
Number of Sequences: 28952
Number of extensions: 134501
Number of successful extensions: 505
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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