Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H23
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    27   2.9  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.8  
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.8  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   3.8  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    26   5.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   6.6  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   6.6  

>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +3

Query: 318 HTDSHLITQEKGGKLKVFELTNSGYEEDAVIEVDYPGFCRFEANTK----LASLYVPEKD 485
           HT  +L T +KGG++ +FE  +S          +Y  F  F+++      L SL + EK 
Sbjct: 39  HTGDYLATGDKGGRVVLFERNHSKK------GCEYKFFTEFQSHEPEFDYLKSLEIEEKI 92

Query: 486 YKINIYNFNGEKLGSLXYDDASVKL 560
            KI            L  +D ++KL
Sbjct: 93  NKIRWCKRTNRAHFLLSTNDKTIKL 117


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 320 VYKMKNRSLTNLYLLLNSICLEVVC--VNITVFRTG 219
           ++    R LT+  ++L   CL +VC  ++IT+  TG
Sbjct: 336 IFSYLTRYLTDRDIILLGCCLNIVCMVIHITIHYTG 371


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 131 IRRKQCHFWTSSNQNLCRN*KLK-RLTKLIKPLETKPQLRTTQN 3
           ++ +Q   W+   Q L ++ + K +L +++KPL + P+L+   N
Sbjct: 84  MQERQERNWSLERQRLVQHFESKTKLQEILKPLSSDPKLKQPSN 127


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 378 TNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPEKDYKINI 500
           ++S  EEDA +E+D P   + E N   AS  +  K   I +
Sbjct: 249 SDSEIEEDATVEIDRPVPTKTEENLLSASQLLKPKQQAIKL 289


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 367 TLSFPPFSCVIRWL 326
           T+ + PFSC I+WL
Sbjct: 360 TIDYLPFSCAIKWL 373


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -3

Query: 288 LVSSAELYLSGGCMRKHNRFSNRLVTSLSPRVKN*KPVNKLAHYRHFG*CKQDPEE 121
           L+    L+L+  C+ ++ R +   V++   R+     V+ L   RHFG    DP+E
Sbjct: 625 LIELERLWLTRECILRYLRATKWHVSNAKKRI-----VDTLVWRRHFGVNNMDPDE 675


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 165 PVYSLAFSFLPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPI 305
           P+ S A    P G    +  S NG+ + ++     + QK+ V + P+
Sbjct: 566 PLPSPAHIMYPEGSPGFIQHSPNGFTHGHSASPVNIGQKLDVPERPM 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,815
Number of Sequences: 5004
Number of extensions: 47390
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)