Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H23
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6) 32 0.43
SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10) 29 2.3
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 29 3.0
SB_21166| Best HMM Match : Pkinase (HMM E-Value=0) 28 5.3
SB_56145| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_36951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28) 28 7.0
SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9) 28 7.0
SB_46078| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 513 GEKLGSLXYDDASVK---LGDVMCLKFIEFPCDXPCL 614
G+ LG+L YDD + L DV L E CD PCL
Sbjct: 19 GQDLGALAYDDTQTETLDLSDVEVLAIEETMCDPPCL 55
>SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6)
Length = 235
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 132 PVYTIRNVDNVPVYSLAFSFLPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILH 311
PVY + N+++VP + S PG L LL S + YN Q ++ ++ + V A ++
Sbjct: 31 PVYEVNNIESVPFPGIISS--PGDLFPLLPDSIR---FIYNAQISKCEEHLSVKLAHLMS 85
Query: 312 LI 317
L+
Sbjct: 86 LV 87
>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 31.5 bits (68), Expect = 0.57
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +3
Query: 198 GGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILHLIHTDSHLITQEKGGKLKVFEL 377
G +RLL+GS + V Y+LQ +V + +PIL L +D ++++++ L ++
Sbjct: 242 GAYKRLLSGSIDRNVKVYDLQDYKVVHSMDY-PSPILSLAVSDDVVVSEKRKTYLNKYDK 300
Query: 378 TNSGYEEDAVIE 413
+E A ++
Sbjct: 301 LVKNFEYAAALD 312
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 30.7 bits (66), Expect = 0.99
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 342 QEKGGKLKVFELTNSGYEEDAVIEVDYPGFCRFEANTKLASL-YVPEKDYKINIYNFNGE 518
QE+GG+L + L +S ++DY RF TKLA+ Y+PE K+ I NF
Sbjct: 1793 QEQGGRLLI-RLGDS--------DIDYDKNFRFYMTTKLANPHYLPEVCIKVTIINFTVT 1843
Query: 519 KLG 527
K G
Sbjct: 1844 KSG 1846
>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 30.7 bits (66), Expect = 0.99
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 192 LPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILHLIHTDSHLITQE--KGGKLK 365
L GG+ +++G K GYVY + + Q + + HT H IT++ + ++
Sbjct: 273 LLGGMCVMVSGPKEGYVYDIYNKAMLLSQYKYTSDTIKVSVCHTLLHAITKQGLETYTVR 332
Query: 366 VFELTNSGYEEDAVIEVDYPGFCRFEANTKLAS 464
++ + G D V++ + + +K+AS
Sbjct: 333 MYAAASQGLRTDRVLQHNLSSMQNEKKESKIAS 365
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +2
Query: 92 GLSLSKNGTASSGSCLHYPKCR*CASLFTGFQFFTRGLREVTSRFEKRLCLRIQPPD 262
GL+ KN T S C Y KC C G V ++ +C + PPD
Sbjct: 471 GLANKKNVTPRS-YCQMYHKCETCGKRIDMIAIQKEGTSHVCGEYKCTVCKEVVPPD 526
>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
Length = 1378
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +2
Query: 92 GLSLSKNGTASSGSCLHYPKCR*CASLFTGFQFFTRGLREVTSRFEKRLCLRIQPPD 262
GL KN T S C Y KC C G+ V ++ +C + PPD
Sbjct: 461 GLPNKKNVTPRS-YCQMYHKCEACGKRIDMVAIQKEGVSHVCGEYKCTVCKEVVPPD 516
>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 598 HGNSMNFRHITSPSFTDASSYXKEPSFSPLKL 503
+G S++F TSP + D ++ +EPS +P L
Sbjct: 112 YGGSISFEDETSPRYYDNNNTYEEPSLTPAAL 143
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 598 HGNSMNFRHITSPSFTDASSYXKEPSFSPLKL 503
+G S++F TSP + D ++ +EPS +P L
Sbjct: 1693 YGGSISFEDETSPRYYDNNNTYEEPSLTPAAL 1724
>SB_21166| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 282
Score = 28.3 bits (60), Expect = 5.3
Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Frame = +3
Query: 204 LERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILHLIHTDSHLITQEKGGKLKVFELTN 383
L+RL +KN + Q + + + I+ + S +++ L F T
Sbjct: 44 LKRLHTNTKNKKAAMQSFQAECRNEVLSLDHPNIIKTLAVSSAFTLEDEPCLLMEFVSTR 103
Query: 384 SGYE--EDAVIEVDYPGFCRFEANTKLASLYVPEKDYKINIYNFNGEKLGSLXYDDASVK 557
+ +D ++D+ R + A +Y+ + I + + + L DD S K
Sbjct: 104 TLQHVIDDTNEKMDFARKLRVNSEISNALVYI----HNSGIVHLDLKPANVLIADDGSCK 159
Query: 558 LGDVMCLKFIEFPCDXP 608
+GD C +F++ + P
Sbjct: 160 IGDFGCCQFVDDQPNTP 176
>SB_56145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 141 CKQDPEEAVPFLDKLKPKLVSELE 70
CK + E+ PFL K++ +L SEL+
Sbjct: 26 CKTNAYESTPFLSKIRSQLSSELK 49
>SB_36951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 327 SHLITQEKGGKLKVFELTNSGYEEDAV 407
+HLI QE+ L++ EL ++ Y++DA+
Sbjct: 12 AHLIKQEEKVNLELRELQHTAYDDDAI 38
>SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)
Length = 539
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 288 VGQAPILHLIHT-DSHLITQEKGGKLKVFEL-TNSGYEEDAVIEVDYPGFCRFEANTKLA 461
VG +H + T +HLI+ ++G LKV+++ T Y E + C +T L
Sbjct: 92 VGHDKDVHCLLTFGAHLISVDEGSSLKVWDIKTTELYLEVGFDSKTFHITCLMHPSTYLN 151
Query: 462 SLYVPEKDYKINIYNFNGEKLGSLXYDDASVKL 560
+ + K + I+N + YD+A+V +
Sbjct: 152 KILLCSKQGSMQIWNIKTK------YDNATVNV 178
>SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)
Length = 433
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 285 VSSAELYLSGGCMRKHNRFSNRLVTSLSPRVKN*KPVNKLAHYRH 151
++S +L GC N+F N L TS+ + K +NKL ++H
Sbjct: 89 MASINTHLDSGC----NKFGNELNTSIKSGIGVEKRINKLDVHKH 129
>SB_46078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 252 CMRKHNRFSNRLVTSL-SPRVKN*KPVNKLAHYRHFG*CKQDPEEAVP 112
C RKHN NR TS+ + K + LA F C +D E+ VP
Sbjct: 8 CKRKHNTSENRSNTSVRKHEYEKIKQLRSLALTLTF--CSKDSEDGVP 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,413,364
Number of Sequences: 59808
Number of extensions: 338495
Number of successful extensions: 701
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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