Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H23
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containi... 34 0.066
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot... 33 0.20
At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A... 31 0.81
At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A... 31 0.81
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 30 1.4
At1g17720.2 68414.m02194 serine/threonine protein phosphatase 2A... 29 2.5
At1g17720.1 68414.m02193 serine/threonine protein phosphatase 2A... 29 2.5
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 28 4.3
At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, put... 28 5.7
At1g32160.1 68414.m03956 expressed protein 28 5.7
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 27 10.0
>At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1227
Score = 34.3 bits (75), Expect = 0.066
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 372 ELTNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPE---KDYKINIYNFN 512
EL + G+++D V G+C +E + K A LY+ E K YK ++Y++N
Sbjct: 348 ELEHLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYN 397
>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
protein, Arabidopsis thaliana, EMBL:AJ001729; contains
Pfam profile PF00225: Kinesin motor domain
Length = 1273
Score = 32.7 bits (71), Expect = 0.20
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 258 QTNRVQQKIQVGQAPILHLIHTDSHLITQ--EKGGKLKVFELTNSGYEEDAVIEVDYPGF 431
++ ++ Q + +A I LI+ L G +KVF +E++ +++PG
Sbjct: 107 KSRKLDQFVLETEARISPLINEKKRLFNDLLTAKGNIKVFCRARPLFEDEGPSVIEFPGD 166
Query: 432 CRFEANTKLASLYVPEKDYKIN 497
C NT +L P+KD++ +
Sbjct: 167 CTICVNTSDDTLSNPKKDFEFD 188
>At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
regulatory subunit of phosphatase 2A (GI:710330)
[Arabidopsis thaliana]; similar to type 2A protein
serine/threonine phosphatase 55 kDa B regulatory
GI:1408460 [Arabidopsis thaliana]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
Length = 512
Score = 30.7 bits (66), Expect = 0.81
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 285 QVGQAPILHLIHTDS---HLITQEKGGKLKVFELT---NSGYEEDAVIEVDYP-GFCRFE 443
+V + I+ I D+ HL T ++GG++ +FE T NS + E DYP F
Sbjct: 34 EVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERTDTNNSSGTRRELEEADYPLRHPEFR 93
Query: 444 ANTKLASLYVPEKDY 488
T+ S + PE DY
Sbjct: 94 YKTEFQS-HDPEFDY 107
>At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
regulatory subunit of phosphatase 2A (GI:710330)
[Arabidopsis thaliana]; similar to type 2A protein
serine/threonine phosphatase 55 kDa B regulatory
GI:1408460 [Arabidopsis thaliana]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
Length = 513
Score = 30.7 bits (66), Expect = 0.81
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 285 QVGQAPILHLIHTDS---HLITQEKGGKLKVFELT---NSGYEEDAVIEVDYP-GFCRFE 443
+V + I+ I D+ HL T ++GG++ +FE T NS + E DYP F
Sbjct: 34 EVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERTDTNNSSGTRRELEEADYPLRHPEFR 93
Query: 444 ANTKLASLYVPEKDY 488
T+ S + PE DY
Sbjct: 94 YKTEFQS-HDPEFDY 107
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -3
Query: 258 GGCMRKHNRFSNRLVTSLSPRVKN*KPVNKLAHYRHFG*CKQDPEEAVPFLDKLKPKL 85
GG RF + V S + RV++ + VN++AH R +++ EAV + + +P L
Sbjct: 43 GGASLPRTRFQSSYVGSFARRVRDREEVNEVAHLREL--IRRNDPEAVIRMFESQPSL 98
>At1g17720.2 68414.m02194 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to type 2A
protein serine/threonine phosphatase 55 kDa B regulatory
subunit (GI:1408460) [Arabidopsis thaliana]; similar to
55 kDa B regulatory subunit of phosphatase 2A GI:710330;
contains Pfam PF00400: WD domain, G-beta repeat (5
copies, 3 weak)
Length = 500
Score = 29.1 bits (62), Expect = 2.5
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 285 QVGQAPILHLIHTDS---HLITQEKGGKLKVFELTNS---GYEEDAVIEVDYP-GFCRFE 443
+V + I+ I D HL T ++GG++ +FE T++ G + + DYP F
Sbjct: 32 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRKDLEQTDYPVRHPEFR 91
Query: 444 ANTKLASLYVPEKDY 488
T+ S + PE DY
Sbjct: 92 YKTEFQS-HEPEFDY 105
>At1g17720.1 68414.m02193 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to type 2A
protein serine/threonine phosphatase 55 kDa B regulatory
subunit (GI:1408460) [Arabidopsis thaliana]; similar to
55 kDa B regulatory subunit of phosphatase 2A GI:710330;
contains Pfam PF00400: WD domain, G-beta repeat (5
copies, 3 weak)
Length = 501
Score = 29.1 bits (62), Expect = 2.5
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +3
Query: 285 QVGQAPILHLIHTDS---HLITQEKGGKLKVFELTNS---GYEEDAVIEVDYP-GFCRFE 443
+V + I+ I D HL T ++GG++ +FE T++ G + + DYP F
Sbjct: 32 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRKDLEQTDYPVRHPEFR 91
Query: 444 ANTKLASLYVPEKDY 488
T+ S + PE DY
Sbjct: 92 YKTEFQS-HEPEFDY 105
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 354 GKLKVFELTNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPEKDYKIN 497
G +KVF +E++ +++P C NT +L P+K+++ +
Sbjct: 137 GNVKVFCRARPLFEDEGPSIIEFPDNCTIRVNTSDDTLSNPKKEFEFD 184
>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase,
putative contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 892
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 167 WHIIDISDSVNRIRRKQCHFWTSSNQNLCRN*KLKRLTKLIKPLETKP 24
W ID+ VN + H TS++ N+C K T LI LE +P
Sbjct: 133 WATIDLQKFVNGTMEEILHTPTSNSLNVCLV-KTGTTTPLISALELRP 179
>At1g32160.1 68414.m03956 expressed protein
Length = 406
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 607 GXSHGNSMNFRHITSPSFTDASSYXKEPSFSPLKL*MFIL 488
G SHG + F H S SF+ S PS P + F +
Sbjct: 5 GSSHGRRLCFNHYLSDSFSKFLSPSSSPSLLPQRCHSFCI 44
>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 477
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 71 SNSDTSFGLSLSKNGTASSGSCLHYP 148
+N +S S S++G++SSGSCL P
Sbjct: 446 NNESSSSSSSSSESGSSSSGSCLCEP 471
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,385,946
Number of Sequences: 28952
Number of extensions: 247603
Number of successful extensions: 630
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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