Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H22
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336...    70   2e-12
01_01_0043 - 321810-321973,322054-322846                               31   0.52 
01_01_0044 - 326337-326500,326618-327398                               31   0.69 
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791...    30   1.2  
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           29   3.7  
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698...    29   3.7  
03_02_0499 - 8908323-8908423,8908822-8908972,8909761-8909867,890...    27   8.5  

>02_05_1223 +
           35033273-35033353,35033455-35033539,35033613-35033683,
           35034400-35034531,35034654-35034769,35035128-35035251,
           35035349-35035417,35035508-35035628,35035707-35035843
          Length = 311

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/80 (40%), Positives = 55/80 (68%)
 Frame = +2

Query: 350 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 529
           +G+Q+++P+RG     + LK+ GDLGQ++   Y+  D +SI   +  SNVVINL+GR+YE
Sbjct: 1   MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60

Query: 530 TKNFKYNDVHVDGVRRIAXI 589
           T+N+ +++V+     ++A I
Sbjct: 61  TRNYGFDEVNHHMAEQLAMI 80


>01_01_0043 - 321810-321973,322054-322846
          Length = 318

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +2

Query: 257 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 424
           +GG  +       V G TG++GR+V     ++G   T L+      D   AQ L    D 
Sbjct: 3   SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDA 62

Query: 425 GQVLFTPYHLLDEESIAKAVRYSNVVINLV 514
           G  L     L D  S+ +AVR ++VVI+ V
Sbjct: 63  GVTLLHG-DLHDHASLLRAVRDADVVISAV 91


>01_01_0044 - 326337-326500,326618-327398
          Length = 314

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +2

Query: 257 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 424
           +GG    + I+  V G TG++GR+V     ++G   T L+      D   +Q L+   D 
Sbjct: 3   SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDA 60

Query: 425 GQVLFTPYHLLDEESIAKAVRYSNVVINLVG 517
           G  L     L D  S+  AVR ++VVI+ +G
Sbjct: 61  GVTLLHG-DLYDHASLLSAVRDADVVISTLG 90


>12_01_0844 +
           7915121-7915225,7915724-7915777,7915888-7915968,
           7916164-7916209,7916311-7916405,7916581-7916613,
           7916941-7917286,7917372-7917511
          Length = 299

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 263 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 424
           GR+     VA V G +  +GR +   LGK G ++I+ Y     +A+  +VC ++
Sbjct: 3   GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54


>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 361 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLICCKVGF 227
           + ++FS   A+  SDK    EN G   + ++ +  TS    KVGF
Sbjct: 548 ISSSFSNMTANDHSDKLNVKENVGNTIIHSSRSVDTSNAEHKVGF 592


>07_03_1727 +
           29068348-29068571,29069473-29069514,29069593-29069839,
           29069936-29070013,29070551-29070736,29070829-29071126,
           29071775-29072244
          Length = 514

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 287 VATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK-VC--GDLGQVLFTPYHLL 457
           +A V G    +G  VC +L   G  +IL  R +      ++ +C   +L  ++F    +L
Sbjct: 90  LAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNIIFHQLDIL 149

Query: 458 DEESIAKAVRYSN 496
           D  S A   RY N
Sbjct: 150 DGNSRASLARYIN 162


>03_02_0499 -
           8908323-8908423,8908822-8908972,8909761-8909867,
           8909954-8910170,8910941-8911148,8911261-8911358
          Length = 293

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 263 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK 409
           GR S +G +A V G T  +GR V  +L  +G  +    R +    +RLK
Sbjct: 14  GRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLK 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,088,820
Number of Sequences: 37544
Number of extensions: 269565
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)