Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H22
(593 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111546-1|AAI11547.1| 377|Homo sapiens NADH dehydrogenase (ubi... 140 3e-33
BC015837-1|AAH15837.1| 377|Homo sapiens NADH dehydrogenase (ubi... 140 3e-33
BC009311-1|AAH09311.1| 377|Homo sapiens NADH dehydrogenase (ubi... 140 3e-33
AF050641-1|AAD42055.1| 377|Homo sapiens NADH-ubiquinone oxidore... 140 3e-33
L04490-1|AAA36350.1| 375|Homo sapiens NADH dehydrogenase (ubiqu... 140 4e-33
BC003351-1|AAH03351.1| 338|Homo sapiens Similar to NADH dehydro... 139 8e-33
BC111532-1|AAI11533.1| 706|Homo sapiens ZNF304 protein protein. 29 9.4
BC111531-1|AAI11532.1| 617|Homo sapiens ZNF304 protein protein. 29 9.4
AJ276316-1|CAC06610.1| 659|Homo sapiens zinc finger protein 304... 29 9.4
>BC111546-1|AAI11547.1| 377|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 9, 39kDa protein.
Length = 377
Score = 140 bits (339), Expect = 3e-33
Identities = 70/154 (45%), Positives = 100/154 (64%)
Frame = +2
Query: 128 AXALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGC 307
A A +++ L +++ + + R+ + A G GGRSS +GIVATVFG
Sbjct: 2 AAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFGA 61
Query: 308 TGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVR 487
TGF+GRYV N LG++G+Q+I+PYR D YD L+ GDLGQ+LF + D++SI + V+
Sbjct: 62 TGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQ 121
Query: 488 YSNVVINLVGRDYETKNFKYNDVHVDGVRRIAXI 589
+SNVVINL+GRD+ETKNF + DV V + IA +
Sbjct: 122 HSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQL 155
>BC015837-1|AAH15837.1| 377|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 9, 39kDa protein.
Length = 377
Score = 140 bits (339), Expect = 3e-33
Identities = 70/154 (45%), Positives = 100/154 (64%)
Frame = +2
Query: 128 AXALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGC 307
A A +++ L +++ + + R+ + A G GGRSS +GIVATVFG
Sbjct: 2 AAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFGA 61
Query: 308 TGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVR 487
TGF+GRYV N LG++G+Q+I+PYR D YD L+ GDLGQ+LF + D++SI + V+
Sbjct: 62 TGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQ 121
Query: 488 YSNVVINLVGRDYETKNFKYNDVHVDGVRRIAXI 589
+SNVVINL+GRD+ETKNF + DV V + IA +
Sbjct: 122 HSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQL 155
>BC009311-1|AAH09311.1| 377|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 9, 39kDa protein.
Length = 377
Score = 140 bits (339), Expect = 3e-33
Identities = 70/154 (45%), Positives = 100/154 (64%)
Frame = +2
Query: 128 AXALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGC 307
A A +++ L +++ + + R+ + A G GGRSS +GIVATVFG
Sbjct: 2 AAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFGA 61
Query: 308 TGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVR 487
TGF+GRYV N LG++G+Q+I+PYR D YD L+ GDLGQ+LF + D++SI + V+
Sbjct: 62 TGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQ 121
Query: 488 YSNVVINLVGRDYETKNFKYNDVHVDGVRRIAXI 589
+SNVVINL+GRD+ETKNF + DV V + IA +
Sbjct: 122 HSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQL 155
>AF050641-1|AAD42055.1| 377|Homo sapiens NADH-ubiquinone
oxidoreductase 39kDa subunit protein.
Length = 377
Score = 140 bits (339), Expect = 3e-33
Identities = 70/154 (45%), Positives = 100/154 (64%)
Frame = +2
Query: 128 AXALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGC 307
A A +++ L +++ + + R+ + A G GGRSS +GIVATVFG
Sbjct: 2 AAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFGA 61
Query: 308 TGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVR 487
TGF+GRYV N LG++G+Q+I+PYR D YD L+ GDLGQ+LF + D++SI + V+
Sbjct: 62 TGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQ 121
Query: 488 YSNVVINLVGRDYETKNFKYNDVHVDGVRRIAXI 589
+SNVVINL+GRD+ETKNF + DV V + IA +
Sbjct: 122 HSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQL 155
>L04490-1|AAA36350.1| 375|Homo sapiens NADH dehydrogenase
(ubiquinone) protein.
Length = 375
Score = 140 bits (338), Expect = 4e-33
Identities = 67/122 (54%), Positives = 89/122 (72%)
Frame = +2
Query: 224 RKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQR 403
R+ + A G GGRSS +GIVATVFG TGF+GRYV N LG++G+Q+I+PYR D YD
Sbjct: 32 RQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMH 91
Query: 404 LKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIA 583
L+ GDLGQ+LF + D++SI + V++SNVVINL+GRD+ETKNF + DV V + IA
Sbjct: 92 LRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIA 151
Query: 584 XI 589
+
Sbjct: 152 QL 153
>BC003351-1|AAH03351.1| 338|Homo sapiens Similar to NADH
dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 (39kD)
protein.
Length = 338
Score = 139 bits (336), Expect = 8e-33
Identities = 65/112 (58%), Positives = 85/112 (75%)
Frame = +2
Query: 254 GTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQV 433
G GGRSS +GIVATVFG TGF+GRYV N LG++G+Q+I+PYR D YD L+ GDLGQ+
Sbjct: 5 GKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQL 64
Query: 434 LFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIAXI 589
LF + D++SI + V++SNVVINL+GRD+ETKNF + DV V + IA +
Sbjct: 65 LFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQL 116
>BC111532-1|AAI11533.1| 706|Homo sapiens ZNF304 protein protein.
Length = 706
Score = 29.5 bits (63), Expect = 9.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 374 YRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVR 487
++GD YD Q L CGD G+ + LLD + VR
Sbjct: 260 HQGD-YDGQMLFSCGDEGKAFLDTFTLLDSQMTHAEVR 296
>BC111531-1|AAI11532.1| 617|Homo sapiens ZNF304 protein protein.
Length = 617
Score = 29.5 bits (63), Expect = 9.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 374 YRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVR 487
++GD YD Q L CGD G+ + LLD + VR
Sbjct: 171 HQGD-YDGQMLFSCGDEGKAFLDTFTLLDSQMTHAEVR 207
>AJ276316-1|CAC06610.1| 659|Homo sapiens zinc finger protein 304
protein.
Length = 659
Score = 29.5 bits (63), Expect = 9.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 374 YRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVR 487
++GD YD Q L CGD G+ + LLD + VR
Sbjct: 213 HQGD-YDGQMLFSCGDEGKAFLDTFTLLDSQMTHAEVR 249
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,363,180
Number of Sequences: 237096
Number of extensions: 1588321
Number of successful extensions: 1867
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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