Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H22
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...   140   9e-34
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical ...    28   4.4  
AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a prot...    28   4.4  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score =  140 bits (338), Expect = 9e-34
 Identities = 72/149 (48%), Positives = 96/149 (64%)
 Frame = +2

Query: 146 QATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGR 325
           QA S +   N S +V   + A+         A +++G GGR+SF+G V TVFG +GF+G 
Sbjct: 14  QAVSVVGSQNFSSAVTSAENAHPEPRVSSQSAQFRKGAGGRASFSGNVVTVFGASGFLGL 73

Query: 326 YVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVI 505
            V NK  K G+Q+I+PYR D Y  +  KV G+LGQVL+ P+ L+DEESI KAV+YSNVVI
Sbjct: 74  PVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEESIRKAVKYSNVVI 133

Query: 506 NLVGRDYETKNFKYNDVHVDGVRRIAXIC 592
           NL+G    T  + Y DV+  G RR+A IC
Sbjct: 134 NLIGTRVPTGKYNYYDVNDTGARRLARIC 162


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 313 ICRTLCVQQIGKNWYPVNFTIQRRFL*CPKVESVRRFRPGPV 438
           +C    +  I +  Y VN T+Q   + CP VES    +P PV
Sbjct: 660 LCEYQMLSCIFERGYGVNLTVQYIGVCCPPVESCDTEKPDPV 701


>AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical
           protein T10D4.3 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -2

Query: 334 AHIASDKSGATENCGYDAVKATAATSTSLICCKVGFTIRTVVSGFDVHNTH 182
           AH +   +   ++ GY+ + + A     +   ++G+ +RT+ S  D  N H
Sbjct: 175 AHYSRFLADLRQHLGYEFIISVAVPQAEVSNLELGYDLRTISSHVDFFNVH 225


>AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a protein
           protein 37 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 250 LICCKVGFTIRTVVSGFDVHNTHRPIQMK 164
           L C KV  ++RT V   + H+TH  +Q++
Sbjct: 29  LTCRKVCRSLRTAVDKIETHSTHLTVQLR 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,427,057
Number of Sequences: 27780
Number of extensions: 243369
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)