Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H21
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    46   4e-06
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    29   0.40 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    28   1.2  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   1.6  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       27   2.1  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    26   4.9  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 15/40 (37%), Positives = 32/40 (80%)
 Frame = +3

Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 572
           ++P+ NF+G L+GP+G+T+K ++  +  K+A+ G+GS+++
Sbjct: 196 DYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKE 235


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +3

Query: 225 GEEGIKINEKAGEYMRELLSEKIK----LNNSKFPLSMKLIDQEVTKVQASGRITKDSKY 392
           G+  +  N K G    ELL+EKIK    +N+  +P+  K +  E+ +     R+ + +K 
Sbjct: 74  GQLAVSKNAKLGLQQYELLAEKIKIYGQINDDNYPIQKKHLTTEMLRQIPHLRL-RTAKQ 132

Query: 393 VDVFR 407
            ++FR
Sbjct: 133 GEIFR 137


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 465 FNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 563
           F+    ++GP+G  +K +Q++T  ++ + G+GS
Sbjct: 303 FHLRQAIVGPQGAYVKHIQQETRTRVQIKGQGS 335


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 355 YRLVVVSPRTQNMWMCSVTNQPKSQLKFLCQLR-NILNSTLWENY*VQKETL 507
           Y   VV+  T    MC  T++ K Q  FLC +R   L  T++  +   KE +
Sbjct: 161 YAKSVVNIETNESHMCIPTDKRKDQTLFLCTIRKEALEKTIFPLHNWTKENV 212


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQ 578
           +HPK  FV    GPK   ++Q++E  + +  V   GS+R  Q
Sbjct: 218 QHPKVRFVIAGDGPKSIDLEQMREKYMLQDRVEMLGSVRHDQ 259


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 574 LSLIEPLPSTAILHSVSSCNCFIVFPFG-PNSFPTKLNLG 458
           L LI+    + I+HS    N FI +PF  P     KL+ G
Sbjct: 96  LKLIDDYNFSIIIHSEDQVNSFIKYPFNRPVEIWLKLDSG 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,542
Number of Sequences: 5004
Number of extensions: 43518
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)