Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H21
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044... 63 2e-10
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285... 62 3e-10
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 62 3e-10
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 62 4e-10
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318... 59 3e-09
03_06_0443 + 33973229-33973311,33973422-33973510,33974873-339750... 53 2e-07
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 53 2e-07
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 49 3e-06
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 38 0.008
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 30 1.7
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 28 6.7
03_06_0395 + 33616304-33616494,33616863-33617095,33617213-336173... 27 8.9
>01_06_1593 +
38502884-38502993,38503580-38503665,38504352-38504497,
38504817-38504933,38505028-38505144,38505858-38506001,
38506099-38506251
Length = 290
Score = 62.9 bits (146), Expect = 2e-10
Identities = 23/48 (47%), Positives = 40/48 (83%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 596
++P +NFVG+LLGP+GN++K+++ T C++ + GRGS++D KE++LR
Sbjct: 150 KYPNYNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLR 197
>05_05_0237 -
23526613-23527178,23527979-23528066,23528384-23528527,
23528674-23528790,23528860-23528970,23530911-23531062,
23531362-23531450,23531664-23531761
Length = 454
Score = 62.5 bits (145), Expect = 3e-10
Identities = 22/47 (46%), Positives = 39/47 (82%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 596
+P FNF+G+LLGP+GN++K+++ T C++ + G+GS++D KEE+L+
Sbjct: 148 YPNFNFIGRLLGPRGNSLKRIEASTGCRVFIRGKGSIKDPNKEEQLK 194
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 62.5 bits (145), Expect = 3e-10
Identities = 23/48 (47%), Positives = 40/48 (83%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 596
++P +NFVG+LLGP+GN++K+++ T C++ + GRGS++D KE++LR
Sbjct: 150 KYPNYNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEDKLR 197
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 61.7 bits (143), Expect = 4e-10
Identities = 22/47 (46%), Positives = 39/47 (82%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 596
+P FNFVG++LGP+GN++K+++ T C++ + G+GS++D KEE+L+
Sbjct: 150 YPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDADKEEKLK 196
>02_05_0567 +
30029862-30030136,30030299-30030384,30031663-30031811,
30032581-30032685,30032779-30032895,30033251-30033394,
30033519-30033668
Length = 341
Score = 58.8 bits (136), Expect = 3e-09
Identities = 21/48 (43%), Positives = 39/48 (81%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELR 596
++P FNFVG++LGP+GN++K+++ T C++ + GRGS++D +E+ +R
Sbjct: 202 KYPTFNFVGRILGPRGNSLKRVEATTDCRVLIRGRGSIKDPAREDMMR 249
>03_06_0443 +
33973229-33973311,33973422-33973510,33974873-33975024,
33975463-33975579,33975729-33975776,33976169-33976312,
33976715-33976858
Length = 258
Score = 53.2 bits (122), Expect = 2e-07
Identities = 19/42 (45%), Positives = 34/42 (80%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQK 581
H +FNFVG++LGP+GN++K+++ T C++ + G+GS++D K
Sbjct: 106 HQEFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGK 147
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 53.2 bits (122), Expect = 2e-07
Identities = 18/39 (46%), Positives = 33/39 (84%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 572
+P FNF+G+LLGP+GN++K+++ T C++ + G+GS++D
Sbjct: 148 YPHFNFIGRLLGPRGNSLKRVEASTGCRVFIRGKGSIKD 186
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 255 AGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA 362
AG+Y+ ELL E+ K+ P+ +L++QE+ ++ A
Sbjct: 32 AGQYLAELLQEQQKIGPFVQVLPICGRLLNQEIMRMSA 69
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 48.8 bits (111), Expect = 3e-06
Identities = 16/40 (40%), Positives = 32/40 (80%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 572
E P +NF+G ++GP+GNT K+++++T K+ + G+GS+++
Sbjct: 105 EFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKE 144
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQS 602
+P N +G L+GP+ N K+LQE+T K+ V G R ++ E+ Q+
Sbjct: 180 YPGHNIIGVLMGPESNAQKRLQEETGAKIRVY--GIKRTNGEKSEIHQA 226
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 474 VGKLLGPKGNTMKQLQEDTLCKMAVL 551
VG L+G +G+T+K+L EDT ++ VL
Sbjct: 108 VGGLIGRRGDTIKRLCEDTRARVRVL 133
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 474 VGKLLGPKGNTMKQLQEDTLCKMAV 548
VG LLG G+ +KQ+ D+ C++ V
Sbjct: 286 VGWLLGKNGSVIKQMSTDSCCEIRV 310
>03_06_0395 +
33616304-33616494,33616863-33617095,33617213-33617303,
33617882-33617930,33618123-33618214,33618285-33618398,
33618473-33619172,33619269-33619336,33619626-33619760,
33619862-33620079,33620169-33620593
Length = 771
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 294 KLNNSKFPLSMKLI--DQEVTKVQASGRITKDSKYVDVFRD 410
K N F L KL+ D V + + GR T+D +VD RD
Sbjct: 515 KPGNHNFELLKKLVLPDGSVLRARLPGRPTRDCLFVDPARD 555
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,735,145
Number of Sequences: 37544
Number of extensions: 240824
Number of successful extensions: 582
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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