Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H21
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 32 0.32
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31) 31 0.74
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 31 0.74
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 29 3.9
SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08) 29 3.9
SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018) 28 5.2
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 28 6.9
SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33) 27 9.1
>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/53 (67%), Positives = 45/53 (84%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLXP 611
+HPKFNFVGKLLGP+GNT K+LQ T KM++LG+GSMRD++KEEELR + P
Sbjct: 111 DHPKFNFVGKLLGPRGNTFKRLQNSTGTKMSILGKGSMRDKEKEEELRATEDP 163
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/93 (29%), Positives = 50/93 (53%)
Frame = +3
Query: 294 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 473
+LN F + +L D+ +Q +I D K ++ E+P+ NF
Sbjct: 58 RLNTRDFRVRKRLEDERHKFIQDMMKINPDFKPPADYKPPLIKIQDKVMIPQDENPEVNF 117
Query: 474 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 572
+G L+GP+GNT+K ++++T K+ + G+GS++D
Sbjct: 118 IGLLIGPRGNTLKNMEKETNAKIMIRGKGSIKD 150
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 32.3 bits (70), Expect = 0.32
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Frame = +3
Query: 180 KRNTTQGKPEELDQNGEEGIKIN---EKAGEYMR-ELLSEKIKLNNSKFPLSMKLIDQEV 347
KR + K E++Q EE EK E MR E E++K + +KF +M + + +V
Sbjct: 423 KRGCEEEKDSEIEQLREELRTTRDDFEKECERMRGEFQEERVK-DYAKFCTAMAVRNAQV 481
Query: 348 TKVQASGRITKDSKYVDVFRD 410
++Q + +T K ++VFR+
Sbjct: 482 LEIQRAELLTDHEKEMEVFRE 502
>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
Length = 353
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINE 251
D NG+ SGD + ++T GKP + + E G KI +
Sbjct: 11 DDSKANGHMSGDSQSSSTSGKPSQQESQTELGQKIEK 47
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINE 251
D NG+ SGD + ++T GKP + + E G KI +
Sbjct: 289 DDSKANGHMSGDSQSSSTSGKPSQQESQTELGQKIEK 325
>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 29.5 bits (63), Expect = 2.2
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Frame = +3
Query: 120 FDLIKMADKYDKNGYNSGDFKRNTTQGK-PEELDQN---GEEGIKINEKAGEYMRELLSE 287
F + YD G S D ++ TT+GK PE + +N G G + E + + + SE
Sbjct: 659 FQTLDRKGGYDNPGQASDDDEKETTRGKAPEPIYENTKDGRCGSAVYENSNVALEAVTSE 718
Query: 288 KIKLNNSK-FPLS-MKLIDQEVTKVQASGRITKDSKYV 395
+ L K F LS +L +EV V + + YV
Sbjct: 719 GVGLAQVKCFNLSPEELESREVIPVDIAFDELPEKYYV 756
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 309 KFPLSMKLIDQEVTKVQASGRITKDSK 389
K+ L M L+++ +T+V A GRIT+D +
Sbjct: 764 KYGLRMSLLERLMTRVAAYGRITEDEE 790
>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
Length = 926
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 150 DKNGYNSGDFKRNTTQGKPEELDQN-GEEGIKINEKAG-EYMREL-LSEKIKLNNSKFPL 320
D NGYN + NT Q + E +K+ A Y ++ I NN+ P+
Sbjct: 502 DMNGYNEVAARNNTAQALSTAIKLRVNNEFVKVTVDAWYRYSASFQMAGVITANNTSTPV 561
Query: 321 SMKLIDQEVTKVQASGRITK 380
S +I E KV A R K
Sbjct: 562 SRSIISLEGQKVLAVRRSKK 581
>SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)
Length = 786
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 135 MADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKI-KLNNSK 311
+A+ D + G+ + TQ EE+ Q E +K E+ R+ E++ K K
Sbjct: 310 LAESLDPIFFVLGNQSNSETQEDLEEMRQ--AEKVKRREEKARLARQAAIEELQKKREEK 367
Query: 312 FPLSMKLIDQEVTKVQASGRITK 380
+ + + E+ +QASG+++K
Sbjct: 368 KQENQRKAEDEMKFLQASGKVSK 390
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 27.9 bits (59), Expect = 6.9
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Frame = +3
Query: 123 DLI-KMADKYDKNGYN--SGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRE--LLSE 287
DLI KMA+ K + + +N + +ELD + + EK MRE LL +
Sbjct: 1099 DLISKMAEYEGKISKHETTSSLAQNRMKEAHQELDTIKRDAKPLMEKYESTMREYELLKD 1158
Query: 288 KIKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVF 404
+++ SK + +D+E+ K +A + +D K D++
Sbjct: 1159 EVEQLRSKLSTTELQLDEEIRKRKALQK-ERDDKAEDLY 1196
>SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)
Length = 283
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 327 KLIDQEVTKVQASGRITKDS 386
KLID+E+TK+++ G I+K S
Sbjct: 55 KLIDEEITKLKSKGAISKVS 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,662,431
Number of Sequences: 59808
Number of extensions: 304189
Number of successful extensions: 862
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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