Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H20
(544 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 122 1e-28
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 122 1e-28
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 121 4e-28
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 117 6e-27
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 33 0.093
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.50
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 0.87
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 2.7
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 2.7
At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein si... 27 6.1
At1g30080.1 68414.m03677 glycosyl hydrolase family 17 protein si... 27 8.1
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 122 bits (295), Expect = 1e-28
Identities = 59/123 (47%), Positives = 78/123 (63%)
Frame = +2
Query: 71 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 250
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 251 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 430
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 431 FVG 439
+G
Sbjct: 122 LLG 124
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +3
Query: 420 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIXFQM 542
+ P LLGPGLNKAGKFP L+SHQES+ K++E K T+ FQ+
Sbjct: 118 QIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQL 158
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 122 bits (295), Expect = 1e-28
Identities = 59/123 (47%), Positives = 78/123 (63%)
Frame = +2
Query: 71 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 250
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 251 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 430
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 431 FVG 439
+G
Sbjct: 122 LLG 124
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +3
Query: 420 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIXFQM 542
+ P LLGPGLNKAGKFP L+SHQES+ K++E K T+ FQ+
Sbjct: 118 QIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQL 158
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 121 bits (291), Expect = 4e-28
Identities = 58/123 (47%), Positives = 77/123 (62%)
Frame = +2
Query: 71 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 250
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 251 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 430
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 121
Query: 431 FVG 439
+G
Sbjct: 122 LLG 124
Score = 62.9 bits (146), Expect = 1e-10
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +3
Query: 420 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIXFQM 542
+ P LLGPGLNKAGKFP L+SHQES+ K++E K T+ FQ+
Sbjct: 118 QIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQL 158
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 117 bits (281), Expect = 6e-27
Identities = 56/124 (45%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Frame = +2
Query: 71 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 247
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 248 KMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 427
KM++C+LGD QH +EA+ + + M SES+IKQIP
Sbjct: 62 KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIP 121
Query: 428 RFVG 439
R +G
Sbjct: 122 RLLG 125
Score = 62.9 bits (146), Expect = 1e-10
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +3
Query: 420 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIXFQM 542
+ P LLGPGLNKAGKFP L+SHQES+ K++E K T+ FQ+
Sbjct: 119 QIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQL 159
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 33.5 bits (73), Expect = 0.093
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 50 SLTNKMSSKVSRDTLYECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGT 220
S + +S + + +E + LQS ++K R +E + D + K+ +
Sbjct: 275 SARSSLSEEATSLLRWEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHL 334
Query: 221 VKLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 319
+K + PK +VCV D +CDE L VP +
Sbjct: 335 LKAPFCVHPKTGRVCVPIDPNNCDEFDPLAVPTL 368
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 149 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 262
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 0.87
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 68 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 208
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 249 FGRGMYFSFTVPEKRLSFC 193
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -3
Query: 227 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 51
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
>At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 397
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/79 (17%), Positives = 39/79 (49%)
Frame = +2
Query: 68 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 247
S ++++ +Y+ +L + + + T+E Q+ DPQ+ ++ + Y+P
Sbjct: 57 SLRITKTRIYDTNPQILSAFANSNIEIIVTIENQVLPLLQDPQQATQWVDSHIKPYVPAT 116
Query: 248 KMQVCVLGDQQHCDEAKTL 304
++ ++G++ D+ +L
Sbjct: 117 RITGIMVGNELFTDDDSSL 135
>At1g30080.1 68414.m03677 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 408
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +2
Query: 68 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 247
S +++ +Y+ VL S + TVE ++ DPQ+ ++ T Y P
Sbjct: 59 SLHINKTRIYDTNPRVLTSFANSNIELFVTVENEMLPSLVDPQQALQWVTTRIKPYFPAT 118
Query: 248 KMQVCVLGDQQHCDEAKTL 304
K+ +G++ + D+ +L
Sbjct: 119 KIGGIAVGNELYTDDDSSL 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,599,919
Number of Sequences: 28952
Number of extensions: 221793
Number of successful extensions: 547
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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