Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H19
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 175 3e-44
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 162 2e-40
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 153 1e-37
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 1e-06
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 30 1.5
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 29 3.5
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 6.1
06_03_0265 - 18923597-18924367,18924459-18924704 28 6.1
04_04_1349 - 32811733-32813040 28 6.1
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 8.0
05_03_0656 - 16676406-16676654 27 8.0
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 175 bits (425), Expect = 3e-44
Identities = 87/126 (69%), Positives = 95/126 (75%)
Frame = +1
Query: 97 VXLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAA 276
V LGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAA
Sbjct: 37 VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 96
Query: 277 MLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTP 456
MLA+QDVA++CK LGITALHIKLRA AQ MKIGRIEDVTP
Sbjct: 97 MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 156
Query: 457 VPSDST 474
VP+DST
Sbjct: 157 VPTDST 162
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 162 bits (394), Expect = 2e-40
Identities = 87/137 (63%), Positives = 95/137 (69%), Gaps = 11/137 (8%)
Frame = +1
Query: 97 VXLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAA 276
V LGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAA
Sbjct: 15 VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 74
Query: 277 MLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI----- 441
MLA+QDVA++CK LGITALHIKLRA AQ MKIGRI
Sbjct: 75 MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVL 134
Query: 442 ------EDVTPVPSDST 474
EDVTPVP+DST
Sbjct: 135 SIFCHTEDVTPVPTDST 151
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 153 bits (371), Expect = 1e-37
Identities = 77/115 (66%), Positives = 84/115 (73%)
Frame = +1
Query: 97 VXLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAA 276
V LGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAA
Sbjct: 14 VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 73
Query: 277 MLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 441
MLA+QDVA++CK LGITALHIKLRA AQ MKIGRI
Sbjct: 74 MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 220 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 312
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 220 VTGGMKVKADRDEASPYAAMLAAQDVA 300
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 327 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 437
G H PC+ W + W WC SG C + WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 109 PQHLVGXTVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 240
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 340 LCARPLCQEFCISLLHPV 287
LC R LC+EFC+ + P+
Sbjct: 51 LCTRDLCEEFCLLRISPL 68
>06_03_0265 - 18923597-18924367,18924459-18924704
Length = 338
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 195 IRPGNYRPCHWWHEGEG*P**SVTLRCYVGGT 290
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPAE------VRLKCSVANT 336
>04_04_1349 - 32811733-32813040
Length = 435
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 10 DAFIFXQLSSSRLSHGPVVKNKVAKSXVQVXLGPQHLVGXTVFGVAH 150
DAF + + +L H + + A S + L P H +G +F +AH
Sbjct: 125 DAFRMSRPAFFQLLHSLALSDPAAASSSSLALPPDHKLGAALFRLAH 171
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 312 NSWHNGLAHKAPCYWWKQNKDPWSWC 389
+ W GL +P Y + N D + WC
Sbjct: 305 DGWQEGLITFSPTYKYHPNSDQYYWC 330
>05_03_0656 - 16676406-16676654
Length = 82
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 282 GGTGCSREMQNSWHNGLAHKAPCYWWKQNKD 374
GG G + + H+GLA A +WW D
Sbjct: 33 GGGGGEAASRRAGHSGLASGARGWWWNSGDD 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,551
Number of Sequences: 37544
Number of extensions: 309541
Number of successful extensions: 675
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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