Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H19
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)              155   3e-38
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)                      29   3.6  
SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)               27   8.2  

>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score =  155 bits (375), Expect = 3e-38
 Identities = 80/114 (70%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
 Frame = +1

Query: 103 LGPQHL-VGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 279
           LG +H+  G  VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAM
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246

Query: 280 LAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 441
           LAAQDVA +CK +GITALHIKLRA            AQ          MKIGRI
Sbjct: 247 LAAQDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 300


>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
          Length = 230

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 142 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 255
           + +I  +FND    + DLSG+ETI  ++   K++ +RD
Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189


>SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)
          Length = 141

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 202 RETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHI 339
           R   AR+     V A  DEA+    +   QD+  KCK LG+T + I
Sbjct: 63  RLAFARLFYHHPVIAMLDEATSALDVRTEQDLYRKCKQLGMTLISI 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,312,657
Number of Sequences: 59808
Number of extensions: 353367
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)