Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H19
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi... 175 2e-44
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A) 174 3e-44
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo... 174 4e-44
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 34 0.059
At4g25220.1 68417.m03629 transporter, putative similar to glycer... 28 3.8
At3g56410.2 68416.m06274 expressed protein 28 5.1
At3g56410.1 68416.m06273 expressed protein 28 5.1
At5g12370.1 68418.m01455 exocyst complex component Sec10-related... 27 8.9
>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
to 40S ribosomal protein S14 GB:P19950 [Zea mays]
Length = 150
Score = 175 bits (425), Expect = 2e-44
Identities = 87/137 (63%), Positives = 99/137 (72%), Gaps = 1/137 (0%)
Frame = +1
Query: 67 KNKVAKSXVQ-VXLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 243
K K + V+ V LGP G VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 3 KRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62
Query: 244 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 423
ADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 63 ADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSG 122
Query: 424 MKIGRIEDVTPVPSDST 474
MKIGRIEDVTP+P+DST
Sbjct: 123 MKIGRIEDVTPIPTDST 139
>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
Length = 150
Score = 174 bits (424), Expect = 3e-44
Identities = 88/136 (64%), Positives = 98/136 (72%)
Frame = +1
Query: 67 KNKVAKSXVQVXLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKA 246
K K K V V LGP G VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGMKVKA
Sbjct: 5 KTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63
Query: 247 DRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXM 426
DRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ M
Sbjct: 64 DRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGM 123
Query: 427 KIGRIEDVTPVPSDST 474
KIGRIEDVTP+P+DST
Sbjct: 124 KIGRIEDVTPIPTDST 139
>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
ribosomal protein S14 -Zea mays,PIR2:A30097
Length = 150
Score = 174 bits (423), Expect = 4e-44
Identities = 86/137 (62%), Positives = 99/137 (72%), Gaps = 1/137 (0%)
Frame = +1
Query: 67 KNKVAKSXVQ-VXLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 243
K K + V+ V LGP G VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 3 KRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVK 62
Query: 244 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 423
ADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 63 ADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSG 122
Query: 424 MKIGRIEDVTPVPSDST 474
MKIGRIEDVTP+P+DST
Sbjct: 123 MKIGRIEDVTPIPTDST 139
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 34.3 bits (75), Expect = 0.059
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 142 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 321
+ HI N+TFV VTD G +G + + + Y A A+++ + K +G
Sbjct: 195 IIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMG 254
Query: 322 ITALHIKL 345
+ ++ +K+
Sbjct: 255 LKSVVVKV 262
>At4g25220.1 68417.m03629 transporter, putative similar to
glycerol-3-phosphate transporter (glycerol 3-phosphate
permease) [Homo sapiens] GI:7543982
Length = 504
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 509 YSLRPLRPPFLRVESDGTGVTSSMR 435
Y P+ PP + E DGT + S+MR
Sbjct: 225 YLFLPVNPPTVEAERDGTEIDSTMR 249
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 276 YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 434
Y G+ C E +NSW + A + N +P+ W S + +YE W
Sbjct: 1040 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1090
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 276 YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 434
Y G+ C E +NSW + A + N +P+ W S + +YE W
Sbjct: 993 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1043
>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
low similarity to SP|O00471 Exocyst complex component
Sec10 (hSec10) {Homo sapiens}
Length = 858
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 223 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 330
+GG+++K D +E + A V EK + LGI A
Sbjct: 777 SGGLRLKRDLNEYVGFVKSFGAPSVDEKFELLGIIA 812
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,827,657
Number of Sequences: 28952
Number of extensions: 236607
Number of successful extensions: 511
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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