Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H17
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)             141   6e-34
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   2e-08
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     32   0.43 
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)               31   1.0  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  31   1.0  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           29   5.4  
SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)              29   5.4  
SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)                     28   7.1  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   9.4  

>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score =  141 bits (341), Expect = 6e-34
 Identities = 60/98 (61%), Positives = 79/98 (80%)
 Frame = +3

Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 632
           +HPKFNFVGKLLGP+GNT K+LQ  T  KM++LG+GSMRD++KEEELR + DPKY+HL +
Sbjct: 111 DHPKFNFVGKLLGPRGNTFKRLQNSTGTKMSILGKGSMRDKEKEEELRATEDPKYAHLGE 170

Query: 633 DLHVEISAIAPPAEAHARIAYALAEVKKYLXPDTNETV 746
           +LHV I   APP +AHAR+  A+ E+KKYL P+ N+ +
Sbjct: 171 ELHVLIEVEAPPGQAHARLGIAIEEIKKYLIPEMNDEI 208


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 33/141 (23%), Positives = 68/141 (48%)
 Frame = +3

Query: 294 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 473
           +LN   F +  +L D+    +Q   +I  D K    ++               E+P+ NF
Sbjct: 58  RLNTRDFRVRKRLEDERHKFIQDMMKINPDFKPPADYKPPLIKIQDKVMIPQDENPEVNF 117

Query: 474 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVEIS 653
           +G L+GP+GNT+K ++++T  K+ + G+GS++D ++     +  D +  +  +D  +   
Sbjct: 118 IGLLIGPRGNTLKNMEKETNAKIMIRGKGSIKDGKQ----GRGRDMQLMNSGEDEPLHAL 173

Query: 654 AIAPPAEAHARIAYALAEVKK 716
              P AE+  +    + ++ K
Sbjct: 174 VTGPTAESVKKAVNMIQDILK 194


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
 Frame = +3

Query: 180 KRNTTQGKPEELDQNGEEGIKIN---EKAGEYMR-ELLSEKIKLNNSKFPLSMKLIDQEV 347
           KR   + K  E++Q  EE        EK  E MR E   E++K + +KF  +M + + +V
Sbjct: 423 KRGCEEEKDSEIEQLREELRTTRDDFEKECERMRGEFQEERVK-DYAKFCTAMAVRNAQV 481

Query: 348 TKVQASGRITKDSKYVDVFRD 410
            ++Q +  +T   K ++VFR+
Sbjct: 482 LEIQRAELLTDHEKEMEVFRE 502


>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
          Length = 353

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINE 251
           D    NG+ SGD + ++T GKP + +   E G KI +
Sbjct: 11  DDSKANGHMSGDSQSSSTSGKPSQQESQTELGQKIEK 47


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINE 251
           D    NG+ SGD + ++T GKP + +   E G KI +
Sbjct: 289 DDSKANGHMSGDSQSSSTSGKPSQQESQTELGQKIEK 325


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 522  EDTLCKM-AVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 647
            +DTL  + AVL RG       E+EL Q+L+ KY  L D L  E
Sbjct: 1292 QDTLANVRAVLTRGEEGVAADEDELVQALESKYDALRDKLMAE 1334



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = +3

Query: 507 MKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 647
           ++ ++E+ L  ++ +  G+   R +E+EL ++L+ KY  L D L +E
Sbjct: 436 VQAIEEEWLDCLSAVILGTEEGRGQEDELLKALEDKYDALRDKLLLE 482


>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
 Frame = +3

Query: 120 FDLIKMADKYDKNGYNSGDFKRNTTQGK-PEELDQN---GEEGIKINEKAGEYMRELLSE 287
           F  +     YD  G  S D ++ TT+GK PE + +N   G  G  + E +   +  + SE
Sbjct: 659 FQTLDRKGGYDNPGQASDDDEKETTRGKAPEPIYENTKDGRCGSAVYENSNVALEAVTSE 718

Query: 288 KIKLNNSK-FPLS-MKLIDQEVTKVQASGRITKDSKYV 395
            + L   K F LS  +L  +EV  V  +     +  YV
Sbjct: 719 GVGLAQVKCFNLSPEELESREVIPVDIAFDELPEKYYV 756


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +3

Query: 309 KFPLSMKLIDQEVTKVQASGRITKDSK 389
           K+ L M L+++ +T+V A GRIT+D +
Sbjct: 764 KYGLRMSLLERLMTRVAAYGRITEDEE 790


>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
          Length = 926

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
 Frame = +3

Query: 150 DKNGYNSGDFKRNTTQGKPEELDQN-GEEGIKINEKAG-EYMREL-LSEKIKLNNSKFPL 320
           D NGYN    + NT Q     +      E +K+   A   Y     ++  I  NN+  P+
Sbjct: 502 DMNGYNEVAARNNTAQALSTAIKLRVNNEFVKVTVDAWYRYSASFQMAGVITANNTSTPV 561

Query: 321 SMKLIDQEVTKVQASGRITK 380
           S  +I  E  KV A  R  K
Sbjct: 562 SRSIISLEGQKVLAVRRSKK 581


>SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)
          Length = 786

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +3

Query: 135 MADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKI-KLNNSK 311
           +A+  D   +  G+   + TQ   EE+ Q   E +K  E+     R+   E++ K    K
Sbjct: 310 LAESLDPIFFVLGNQSNSETQEDLEEMRQ--AEKVKRREEKARLARQAAIEELQKKREEK 367

Query: 312 FPLSMKLIDQEVTKVQASGRITK 380
              + +  + E+  +QASG+++K
Sbjct: 368 KQENQRKAEDEMKFLQASGKVSK 390


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
 Frame = +3

Query: 123  DLI-KMADKYDKNGYN--SGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRE--LLSE 287
            DLI KMA+   K   +  +    +N  +   +ELD    +   + EK    MRE  LL +
Sbjct: 1099 DLISKMAEYEGKISKHETTSSLAQNRMKEAHQELDTIKRDAKPLMEKYESTMREYELLKD 1158

Query: 288  KIKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVF 404
            +++   SK   +   +D+E+ K +A  +  +D K  D++
Sbjct: 1159 EVEQLRSKLSTTELQLDEEIRKRKALQK-ERDDKAEDLY 1196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,599,598
Number of Sequences: 59808
Number of extensions: 383291
Number of successful extensions: 1042
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)