Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H17
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 99 2e-21
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 99 4e-21
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 99 4e-21
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 97 2e-20
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 97 2e-20
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 91 8e-19
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 91 8e-19
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 63 2e-10
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 60 2e-09
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 56 3e-08
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 50 1e-06
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 50 1e-06
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 49 4e-06
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 38 0.008
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 38 0.008
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 30 2.0
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 30 2.0
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 30 2.0
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 3.5
U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical pr... 28 8.2
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 99 bits (238), Expect = 2e-21
Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 5/195 (2%)
Frame = +3
Query: 159 GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKL 332
G +SG + T + NG + + + EY+ +LL +K +L + F +L
Sbjct: 37 GPSSGPPQVTITPSGVQSGSANGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERL 96
Query: 333 IDQEVTKVQA---SGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGN 503
D+E+ KV+ +K+S + EHP +NFVG++LGP+G
Sbjct: 97 ADEEINKVRVVLFQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGM 156
Query: 504 TMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVEISAIAPPAEAHA 683
T KQL+++T CK+ V GRGSMRD++KEE R P + HL+++LHV I A
Sbjct: 157 TAKQLEQETGCKIMVRGRGSMRDKKKEELNRGK--PNWEHLSEELHVLIQCEDTENRAKV 214
Query: 684 RIAYALAEVKKYLXP 728
++ A+ EV+K L P
Sbjct: 215 KLMRAVEEVRKLLVP 229
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 98.7 bits (235), Expect = 4e-21
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 5/174 (2%)
Frame = +3
Query: 222 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 386
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 387 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSM 566
+ EHP +NFVG++LGP+G T KQL+++T CK+ V GRGSM
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSM 135
Query: 567 RDRQKEEELRQSLDPKYSHLADDLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
RD++KEE R P + HL+++LHV I A ++ A+ EV+K L P
Sbjct: 136 RDKKKEELNRGK--PNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 187
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 98.7 bits (235), Expect = 4e-21
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 5/174 (2%)
Frame = +3
Query: 222 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 386
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 387 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSM 566
+ EHP +NFVG++LGP+G T KQL+++T CK+ V GRGSM
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSM 135
Query: 567 RDRQKEEELRQSLDPKYSHLADDLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
RD++KEE R P + HL+++LHV I A ++ A+ EV+K L P
Sbjct: 136 RDKKKEELNRGK--PNWEHLSEELHVLIQCEDTENRAKVKLMRAVEEVRKLLVP 187
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 96.7 bits (230), Expect = 2e-20
Identities = 42/96 (43%), Positives = 64/96 (66%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 635
HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE EL S DP+++H +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGP 199
Query: 636 LHVEISAIAPPAEAHARIAYALAEVKKYLXPDTNET 743
LHV++ +AP A+ R+A + E+ + L P +T
Sbjct: 200 LHVKVETVAPAYIAYGRVAAVIEELSRILQPIHEDT 235
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 96.7 bits (230), Expect = 2e-20
Identities = 42/96 (43%), Positives = 64/96 (66%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 635
HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE EL S DP+++H +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGP 199
Query: 636 LHVEISAIAPPAEAHARIAYALAEVKKYLXPDTNET 743
LHV++ +AP A+ R+A + E+ + L P +T
Sbjct: 200 LHVKVETVAPAYIAYGRVAAVIEELSRILQPIHEDT 235
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 91.1 bits (216), Expect = 8e-19
Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Frame = +3
Query: 249 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 419
E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + +
Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203
Query: 420 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQ 599
E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE R
Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRG 263
Query: 600 SLDPKYSHLADDLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
+ + HL DDLHV + H ++ AL +VKK L P
Sbjct: 264 KAN--WEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIP 304
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 91.1 bits (216), Expect = 8e-19
Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Frame = +3
Query: 249 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 419
E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + +
Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203
Query: 420 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQ 599
E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE R
Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRG 263
Query: 600 SLDPKYSHLADDLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
+ + HL DDLHV + H ++ AL +VKK L P
Sbjct: 264 KAN--WEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIP 304
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/85 (38%), Positives = 53/85 (62%)
Frame = +3
Query: 468 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 647
N VG+L+GP+G T++QL++D CK+ + G+G +D KEE LR+ + + HL + +HV
Sbjct: 129 NPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRERVG--WEHLKEPIHVM 186
Query: 648 ISAIAPPAEAHARIAYALAEVKKYL 722
IS + EA + L+ +KK L
Sbjct: 187 ISVRSDSEEAASE---KLSSIKKML 208
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 10/102 (9%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSL----DPKYS 620
++PK+NFVG++LGP+G T+KQL+++T C++ V GR S E + +S P S
Sbjct: 81 KYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRASTTASNPESKPNKSTPSFSKPSLS 140
Query: 621 HLA------DDLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
++ + LHV I + A A++A+A+ +++ L P
Sbjct: 141 IISRNALTEEPLHVYIECQDTQSAAQAKMAHAVEVIQRLLSP 182
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSL-DPKYSHLAD 632
+P +NF+G+++GP+G T KQL++DT C++ + RG+ ++ L ++ D +
Sbjct: 132 YPTYNFIGRIIGPRGTTAKQLEKDTGCRIMI--RGNHSNKMYGNALHKTHGDGSQDAIDL 189
Query: 633 DLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
L V + P EA ARI AL V+ L P
Sbjct: 190 PLRVIVETSGPRREATARITAALETVQVLLVP 221
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 50.4 bits (115), Expect = 1e-06
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 2/151 (1%)
Frame = +3
Query: 294 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 473
+LN + +L K+QA +I + K +R + P NF
Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319
Query: 474 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVEIS 653
VG L+GP+GNT+K L+ +T K+ + G+GS+ KE +L L P + LH ++
Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKGSI----KEGKLTNRLGPMPGE-NEPLHAYVT 374
Query: 654 A--IAPPAEAHARIAYALAEVKKYLXPDTNE 740
+ +A +I +AE PD NE
Sbjct: 375 GTDMNVIKKACEKIKQVIAEAT--ALPDNNE 403
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 50.4 bits (115), Expect = 1e-06
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 2/151 (1%)
Frame = +3
Query: 294 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 473
+LN + +L K+QA +I + K +R + P NF
Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319
Query: 474 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVEIS 653
VG L+GP+GNT+K L+ +T K+ + G+GS+ KE +L L P + LH ++
Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKGSI----KEGKLTNRLGPMPGE-NEPLHAYVT 374
Query: 654 A--IAPPAEAHARIAYALAEVKKYLXPDTNE 740
+ +A +I +AE PD NE
Sbjct: 375 GTDMNVIKKACEKIKQVIAEAT--ALPDNNE 403
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 48.8 bits (111), Expect = 4e-06
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Frame = +3
Query: 126 LIKMADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKL-- 299
L+++A+K+ + + ++ + + + +E K Y+ L EK +L
Sbjct: 14 LLRLAEKHQHSSLLTPPPSDDSQKSLKSTSNHSDQEMSKNLHDVEAYIDALKGEKHQLAQ 73
Query: 300 -NNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFV 476
++ F LID+E+ KV + S+ + P +NFV
Sbjct: 74 YSSGGFNHVFNLIDKEIQKVGGNDAHDGGSQ----MSGDGSMLTETIMVPVEKFPDYNFV 129
Query: 477 GKLLGPKGNTMKQLQEDTLCKMAVLGR 557
G+LLGP+G T KQL+ T C++ +LGR
Sbjct: 130 GRLLGPRGTTAKQLEVTTGCRITILGR 156
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/65 (29%), Positives = 38/65 (58%)
Frame = +3
Query: 462 KFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLH 641
K N++G++LGP G + + ++ + + G GS+R++ +E +R+ + HL + LH
Sbjct: 151 KCNYIGRILGPSGMSARMIENQYDVTLLIRGAGSVRNKAMDERVRK----RNEHLEEPLH 206
Query: 642 VEISA 656
V + A
Sbjct: 207 VLLIA 211
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 468 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 647
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L E
Sbjct: 101 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQLVAE 159
Query: 648 I 650
I
Sbjct: 160 I 160
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 468 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 647
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L E
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQLVAE 222
Query: 648 I 650
I
Sbjct: 223 I 223
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 468 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVE 647
N G ++G G+T++QLQE + CKM +L + + + + LR + DP+ LA L E
Sbjct: 142 NRCGLIIGKSGDTIRQLQEKSGCKM-ILVQDNQSVSDQSKPLRITGDPQKIELAKQLVAE 200
Query: 648 I 650
I
Sbjct: 201 I 201
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 474 VGKLLGPKGNTMKQLQEDT 530
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 474 VGKLLGPKGNTMKQLQEDT 530
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 474 VGKLLGPKGNTMKQLQEDT 530
VG ++GPKG T+K++Q+DT
Sbjct: 176 VGLVVGPKGATIKRIQQDT 194
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 568 LIEPLPSTAILHSVSSCNCFIVFPF 494
L+EP+ I H V CNC++ PF
Sbjct: 746 LLEPIYRAYINHFVDECNCYLKGPF 770
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 189 TTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQAS 365
TTQ P+E D+ + K+ EKA E+ E KL L +L + + T + S
Sbjct: 4 TTQQTPKEADKKKADDKKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPS 62
>U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical
protein C23H3.3 protein.
Length = 378
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 471 FVGKLLGPKGNTMKQLQEDTLCKM 542
F+GKL+G T+ L+ +T C++
Sbjct: 111 FIGKLIGTNRRTLNSLENETQCRV 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,510,542
Number of Sequences: 27780
Number of extensions: 299949
Number of successful extensions: 822
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -