Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H17
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38610.2 68415.m04743 KH domain-containing protein 80 1e-15
At2g38610.1 68415.m04742 KH domain-containing protein 80 1e-15
At1g09660.2 68414.m01085 KH domain-containing quaking protein, p... 79 2e-15
At1g09660.1 68414.m01084 KH domain-containing quaking protein, p... 79 2e-15
At5g56140.1 68418.m07003 KH domain-containing protein 77 2e-14
At3g08620.1 68416.m01001 KH domain-containing protein 76 3e-14
At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus... 75 7e-14
At5g51300.2 68418.m06360 splicing factor-related contains simila... 58 6e-09
At5g51300.1 68418.m06359 splicing factor-related contains simila... 58 6e-09
At3g32940.1 68416.m04174 expressed protein 38 0.007
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 31 0.82
At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.82
At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW... 29 2.5
At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.5
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 29 3.3
At3g28270.2 68416.m03531 expressed protein similar to At14a prot... 29 3.3
At3g28270.1 68416.m03530 expressed protein similar to At14a prot... 29 3.3
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 29 4.4
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 29 4.4
At5g52280.1 68418.m06488 protein transport protein-related low s... 28 5.8
At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 28 5.8
At4g14970.1 68417.m02301 hypothetical protein 28 5.8
>At2g38610.2 68415.m04743 KH domain-containing protein
Length = 286
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/91 (39%), Positives = 60/91 (65%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 635
+P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE++LR P Y HL +
Sbjct: 147 YPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGR--PGYEHLNEQ 204
Query: 636 LHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
LH+ I A P + R+ A +++ L P
Sbjct: 205 LHILIEADLPASIVEIRLRQAQEIIEELLKP 235
>At2g38610.1 68415.m04742 KH domain-containing protein
Length = 286
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/91 (39%), Positives = 60/91 (65%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 635
+P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE++LR P Y HL +
Sbjct: 147 YPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGR--PGYEHLNEQ 204
Query: 636 LHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
LH+ I A P + R+ A +++ L P
Sbjct: 205 LHILIEADLPASIVEIRLRQAQEIIEELLKP 235
>At1g09660.2 68414.m01085 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 264
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/92 (39%), Positives = 62/92 (67%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 632
++P +NFVG++LGP+GN++K+++ T C++ + GRGS++D KEE+L+ P Y HL +
Sbjct: 157 KYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGK--PGYEHLCE 214
Query: 633 DLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
LHV I A P ++R+ +A+ ++ L P
Sbjct: 215 PLHVLIEAELPEDIINSRLEHAVHFLESLLKP 246
>At1g09660.1 68414.m01084 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 298
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/92 (39%), Positives = 62/92 (67%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 632
++P +NFVG++LGP+GN++K+++ T C++ + GRGS++D KEE+L+ P Y HL +
Sbjct: 157 KYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGK--PGYEHLCE 214
Query: 633 DLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
LHV I A P ++R+ +A+ ++ L P
Sbjct: 215 PLHVLIEAELPEDIINSRLEHAVHFLESLLKP 246
>At5g56140.1 68418.m07003 KH domain-containing protein
Length = 315
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/91 (40%), Positives = 56/91 (61%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 635
+P FNFVG+LLGP+GN++K+++ T C++ + GRGS++D KEE +R P Y HL +
Sbjct: 177 YPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGK--PGYEHLNEP 234
Query: 636 LHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
LH+ + A P AR+ A + L P
Sbjct: 235 LHILVEAELPIEIVDARLMQAREILDDLLTP 265
>At3g08620.1 68416.m01001 KH domain-containing protein
Length = 283
Score = 75.8 bits (178), Expect = 3e-14
Identities = 34/91 (37%), Positives = 59/91 (64%)
Frame = +3
Query: 456 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADD 635
+P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KEE+L+ P Y HL +
Sbjct: 146 YPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGK--PGYEHLNEQ 203
Query: 636 LHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
LH+ I A P ++ A +++ + P
Sbjct: 204 LHILIEADLPIDIVDIKLRQAQEIIEELVKP 234
>At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus
musculus
Length = 555
Score = 74.5 bits (175), Expect = 7e-14
Identities = 35/92 (38%), Positives = 57/92 (61%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 632
++P +NFVG+LLGP+GN++K+++ T C++ + GRGS++D KE+ +R P Y HL +
Sbjct: 417 KYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGK--PGYEHLNE 474
Query: 633 DLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
LH+ + A P AR+ A + L P
Sbjct: 475 PLHILVEAELPIEIVDARLMQAREILDDLLTP 506
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 58.0 bits (134), Expect = 6e-09
Identities = 29/92 (31%), Positives = 53/92 (57%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 632
E P +NF+G ++GP+GNT K+++ +T K+ + G+GS+++ + +++ DP + +
Sbjct: 251 EFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDPSEN---E 307
Query: 633 DLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
DLHV + AE + A V+K L P
Sbjct: 308 DLHVLVE-----AETQEALEAAAGMVEKLLQP 334
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 58.0 bits (134), Expect = 6e-09
Identities = 29/92 (31%), Positives = 53/92 (57%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLAD 632
E P +NF+G ++GP+GNT K+++ +T K+ + G+GS+++ + +++ DP + +
Sbjct: 251 EFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDPSEN---E 307
Query: 633 DLHVEISAIAPPAEAHARIAYALAEVKKYLXP 728
DLHV + AE + A V+K L P
Sbjct: 308 DLHVLVE-----AETQEALEAAAGMVEKLLQP 334
>At3g32940.1 68416.m04174 expressed protein
Length = 607
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 453 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDR-----QKEEELRQSLDPKY 617
EH F+F+ + G +G+T K+L+++T K+ + G + ++ E E+++S Y
Sbjct: 143 EHSDFSFLSLIFGSQGDTQKRLEKETGAKVQIFGTKTGGEKVELSPSDENEIQKSWQELY 202
Query: 618 SHLADDLHVEISA 656
++ D + ++ A
Sbjct: 203 FQISSDTYEKVDA 215
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Frame = +3
Query: 474 VGKLLGPKGNTMKQLQEDTLCKMAVL-GRGSMRDR----QKEEELRQSLDPK-------Y 617
VG ++G KG+ +K++ E+T ++ +L G +R +EE SL P +
Sbjct: 198 VGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVH 257
Query: 618 SHLADDLHVEISAIAPPAEAHARI 689
+ D L E S PP++ R+
Sbjct: 258 MRIVDGLDGEASQAPPPSKVSTRL 281
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = +3
Query: 477 GKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLDPKYSHLADDLHVEISA 656
G L+G +G T+K +QE + C + VLG E+L P ++ L DD VE+
Sbjct: 289 GSLIGKQGGTVKAIQEASACIVRVLG---------SEDL-----PVFA-LQDDRVVEV-- 331
Query: 657 IAPPAEAHARIAYALAEVKKYL 722
+ P H + + ++K+L
Sbjct: 332 VGEPTSVHRALELIASHLRKFL 353
>At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 489
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +3
Query: 141 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEK 290
D++D GD KR + EL +GE+G K+ EKA E+ R L+EK
Sbjct: 415 DEWDVGIEIGGDVKREEVEAVVREL-MDGEKGKKMREKAVEWQR--LAEK 461
>At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to
SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis
thaliana]
Length = 473
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 588 ELRQSLDPKYSHLADDLHVEISAIAPPAE 674
+L Q +D +YSH D++H ISA E
Sbjct: 279 DLLQMVDDRYSHCVDEIHTVISAFHAATE 307
>At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 467
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +3
Query: 171 GDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQE 344
GD KR + EL +GE+G K+ EKA E+ R L+EK +K P +I+ E
Sbjct: 403 GDVKRGEVEAVVREL-MDGEKGKKMREKAVEWRR--LAEKA----TKLPCGSSVINFE 453
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +1
Query: 379 RTQNMWMCSVTNQPKSQLKFLCQLRNILNSTLWENY*VQKET 504
+TQ +W C++ + F+C + +L + N + K T
Sbjct: 47 KTQGLWRCAICTYDNVETMFVCDICGVLRHPVAGNQSINKNT 88
>At3g28270.2 68416.m03531 expressed protein similar to At14a protein
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 374
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 201 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 380
K EE++++ E+GIK NE+A E + L+ + L ID E + +T+
Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335
Query: 381 DSKYVD 398
SK V+
Sbjct: 336 ISKKVE 341
>At3g28270.1 68416.m03530 expressed protein similar to At14a protein
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 374
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 201 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 380
K EE++++ E+GIK NE+A E + L+ + L ID E + +T+
Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335
Query: 381 DSKYVD 398
SK V+
Sbjct: 336 ISKKVE 341
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 474 VGKLLGPKGNTMKQLQEDTLCKMAV 548
VG ++G GN +KQLQ+ T K+ V
Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRV 82
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 474 VGKLLGPKGNTMKQLQEDTLCKMAV 548
VG ++G GN +KQLQ+ T K+ V
Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRV 82
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +3
Query: 126 LIKMADKYDKN-GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLN 302
L++ A K +++ G +SG+ + +T + + E+LD + K NE+ + EL E L
Sbjct: 406 LLEEAKKLEEHKGMDSGNNEIDTLKQQIEDLDWELDSYKKKNEEQEILLDELTQEYESLK 465
Query: 303 NSKFP-LSMKLIDQEVTKVQASGRITKD 383
+ +S KL QE + + +KD
Sbjct: 466 EENYKNVSSKLEQQECSNAEDEYLDSKD 493
>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 675
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 150 DKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSE 287
D+ Y G F+ +GK ++ QNGE I E G +RE+ E
Sbjct: 178 DRESYPLGFFRDKAEEGKKQDQQQNGEV-ISDVESYGLSLREVSEE 222
>At4g14970.1 68417.m02301 hypothetical protein
Length = 1286
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 588 ELRQSLDPKYSHLADDLHVEISAIAPPAEAH 680
E R L P Y +L DLH ++ + PP + H
Sbjct: 818 EYRAEL-PLYLYLLHDLHTKLDCLVPPGKQH 847
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,560
Number of Sequences: 28952
Number of extensions: 268251
Number of successful extensions: 759
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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