Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H12
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   0.85 
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    22   3.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 498 ELVRIRVERYEYLVAEFVREVLPKDLHVLS 409
           E+VR++   YE  + E    V P DL +L+
Sbjct: 344 EVVRVKKPHYELNMVEVRSPVTPADLRLLT 373


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 278 LVDCWCCRLKFCR 240
           L +C+CCR  F R
Sbjct: 78  LKECYCCRESFLR 90


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 227 YSKXTYRISTDSTSSP 274
           Y K    +ST STSSP
Sbjct: 188 YIKPQLHVSTGSTSSP 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,783
Number of Sequences: 336
Number of extensions: 2654
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)