Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H12
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ...    61   1e-10
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    28   1.2  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   2.7  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   4.8  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   8.4  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.4  

>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
 Frame = +1

Query: 154 QKHAGRAKEKLLQXLGKVDRTLDDIFEXHLQNFNRQHQQSTRLQKEFNNYIRCIRAAQTA 333
           +K   RA   ++   G V+RT+D  FE   + +      + +LQKE   Y+  +RA   +
Sbjct: 7   KKAVNRAGTSVMMKTGHVERTVDREFETEERRYRTMESAAKKLQKEAKGYLDALRAMTAS 66

Query: 334 SKSLMEAITEVYESGWSGHDLLYVQAQNMEVLWQDFSHKLG----DQVLIPLNTYTNQFP 501
              +   I   Y    S   +     Q +E L  D   +L       VL P++ + + FP
Sbjct: 67  QTRIANTIDAFYGDAGSKDGVSAYYRQVVEDLDADTVKELDGPFRTTVLDPISRFCSYFP 126

Query: 502 EVRKKIEKRGRKLVDYDSQR 561
           ++   I KR  KL+D+D+ R
Sbjct: 127 DINAAITKRNHKLLDHDAMR 146


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 415 NMEVLWQDFSHKLGDQVLIPLNTYTNQFPEVRKKIEKRGRKLVDYDSQRHS 567
           N  +L Q+   ++   VL  +    + F EVR    +RG   V+YDS R +
Sbjct: 173 NKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREA 223


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +1

Query: 430 WQDFSHKLGDQVLIPLNTYTNQFPEVRKKIEKRGRKLVDYDSQRH 564
           W+  ++   ++V++PL+   N+  E   K+     +L+  +  RH
Sbjct: 635 WEKLTNASTEEVMLPLDMVVNELLEKSPKVFPEDSRLLFAEQSRH 679


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
 Frame = +1

Query: 244 QNFNRQHQQSTRLQKEFNNYIRCI-----RAAQTASKSL--MEAITEVYESGWSGHDLLY 402
           +   +   ++++ + EF   I C+     RA +T    +  +EA  E+Y SG S  DLL+
Sbjct: 192 ERIQQMRNEASQRRFEFKTTIECLEESSNRAIETYENRIAELEAQLEMYMSGKSEDDLLF 251

Query: 403 VQAQNME 423
              Q  +
Sbjct: 252 SLQQERD 258


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +3

Query: 396 AVRPSSEHGGPLAGLLAQTRRPSTHTAQHVYEPVPRSQEKNRETWSQTRGLRQSKAQLP 572
           + +P+S      A L  Q   PST  +  +     R +EK++++   +  +  ++ +LP
Sbjct: 404 STKPTSASSSTKAPLTKQQTNPSTPLSSIMAGLKGREKEKDKDSGISSENVSNNREELP 462


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
 Frame = +1

Query: 133 ALIAQTVQKHAGRAKEKLLQXLGKV-DRTLDDIFEXHLQNFNRQHQQSTRLQKEFNNYIR 309
           ALI  T Q   G   E     + KV    L D+F   + +   Q ++S +   E  NY R
Sbjct: 105 ALIVITSQ---GERTESFSNDILKVLSEWLTDLFTI-IDDMRAQSRKSFKGSAELRNYTR 160

Query: 310 CIRAAQTASKSLMEAITEVYESGWSGHDLLYVQAQNMEVLW 432
           C R        ++  +T ++  G++  D + V +     +W
Sbjct: 161 CFR-------QIILLLTNMFRVGFNLFDEMEVSSMLANCVW 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,668
Number of Sequences: 5004
Number of extensions: 43869
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)