Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H12
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 30 1.2
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 29 2.8
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 29 3.7
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 29 3.7
01_07_0351 + 42952504-42952692,42952824-42952910,42953039-429532... 29 3.7
01_06_0029 + 25751750-25752077,25753501-25753622,25754344-257545... 29 3.7
07_01_0327 + 2289472-2289978,2290016-2290444,2290688-2290750,229... 28 4.9
11_01_0117 + 906419-906524,907531-907667,907948-908055,909649-90... 28 6.5
01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867... 28 6.5
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 354 DHGGLRERLVRSRPAVRPSSEHGGPLAGLLAQTRRPSTHTA-QHVYE-PVPRSQEKNRET 527
+HG L A+ + EH G +A + RRP HT+ H+ PR+ E++R +
Sbjct: 714 NHGVLAGSFPDRDMAIHSALEHNGNMASTSYRERRPVEHTSNSHLLSTSAPRANEQSRNS 773
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 310 CIRAAQTASKSLMEAITEVYESGWSGHDLLYVQAQNMEVLWQDFSHKLGDQVLIPLNTYT 489
C+R A+ A + A + ++ + S HD + + + + L FS LG ++P+ T
Sbjct: 1448 CLRVAEVAQAQIAAAESSIHIAYLSVHDKVELDIKYSDELGYTFSEALG---IVPVKIET 1504
Query: 490 NQFPEV 507
N P+V
Sbjct: 1505 NH-PDV 1509
>03_02_0143 -
5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 388 HDLLYVQAQNMEVLWQDFSHKLGDQVLIPLNTYTNQFPEVRKKIEKRGRK 537
H L+ ++++ M Q G QV + Y Q ++R+K EKRG++
Sbjct: 291 HGLMILKSEKMSSSNQPKMPTYGTQVTVQTE-YERQLDKIRRKEEKRGKR 339
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 280 LQKEFNNYIRCIRAAQTASKSLMEAITEVYESGWSGHDLLYVQAQNMEV--LWQDFSHKL 453
L K+ ++ C+R + + E + VY+ L Y+ A ++ + + F+H L
Sbjct: 524 LPKQAFSHTLCLRVLDLGGRQVSELPSSVYKLKL----LRYLDASSLRISSFSKSFNHLL 579
Query: 454 GDQVLIPLNTYTNQFP 501
Q LI NTY P
Sbjct: 580 NLQALILSNTYLKTLP 595
>01_07_0351 +
42952504-42952692,42952824-42952910,42953039-42953257,
42953329-42953502,42954799-42954852,42954983-42955123,
42955599-42955637,42956689-42957045
Length = 419
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 354 DHGGLRERLVRSRPAVRPSSEHGGPLAGLLAQTRRPSTHTAQHVYEPVPRSQEKN--RET 527
DH L+ ++ RP+++PS + G A QT + P+ R++E++ R T
Sbjct: 82 DHPLLKNHTIQMRPSIQPSGMY-GEAARPFTQTWNQNGEKCPDNTVPIRRTKEEDVMRAT 140
Query: 528 WSQTRGLRQSKAQLPXLTG 584
T G + + P L G
Sbjct: 141 SVATFGKKTHGSHHPRLAG 159
>01_06_0029 +
25751750-25752077,25753501-25753622,25754344-25754540,
25754641-25754815,25755126-25755260,25755374-25755583
Length = 388
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 318 SGADSFEVADGSDHGGLRERLVR--SRPAVRPSSEHGG 425
SG F AD D L E+L R RPA R +S+HGG
Sbjct: 10 SGDAGFVRADQIDLKSLDEQLERHLGRPAERAASQHGG 47
>07_01_0327 +
2289472-2289978,2290016-2290444,2290688-2290750,
2290845-2291126
Length = 426
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 324 ADSFEVADGSDHGGLRERLVRSR-PAVRPSSEHGGPLAGLLAQTRR 458
AD F+VA GS GG+ ++ +R P RP L LL + RR
Sbjct: 91 ADFFDVAAGSGAGGVLAAMLFARGPCGRPMYSADDALGFLLRRVRR 136
>11_01_0117 +
906419-906524,907531-907667,907948-908055,909649-909750,
909946-910033,910326-910560,910625-910715
Length = 288
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 15 CRCCQXPAVLVTKFGCIXLVSRAFSIWSCKSAXNGXK 125
C CC P LVT + L + I CKS+ G K
Sbjct: 140 CDCCTRPEDLVTVVCMLHLHQQEILICKCKSSSFGKK 176
>01_07_0191 +
41885121-41885909,41886152-41886190,41886701-41886784,
41887331-41887413,41887501-41887588,41887736-41887990,
41888275-41888403
Length = 488
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 519 DFFPDFGELVRIRVERYEYLVAE 451
DF PDFG +R ER+ +L+ E
Sbjct: 293 DFTPDFGHKLRSIAERHSFLIFE 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,075
Number of Sequences: 37544
Number of extensions: 315443
Number of successful extensions: 1036
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -