Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H12
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39772| Best HMM Match : BAR (HMM E-Value=1.7) 58 7e-09
SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 30 1.6
SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0) 29 3.8
SB_42523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_2536| Best HMM Match : Arfaptin (HMM E-Value=0.93) 28 5.0
SB_4878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32) 28 6.6
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 28 6.6
SB_34884| Best HMM Match : RVT_1 (HMM E-Value=8.1e-25) 28 6.6
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15) 27 8.7
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_39772| Best HMM Match : BAR (HMM E-Value=1.7)
Length = 210
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +1
Query: 328 TASKSLMEAITEVYESGWSGHDLLYVQAQNMEVLWQDFSHKLGDQVLIPLNTYTNQFPEV 507
+AS EA+ +VYE WSG D+++ + V + D KL D+VL PL Y +QFP++
Sbjct: 4 SASADFSEAMKDVYEPDWSGRDVVFKLLDQLHVYYADLQEKLQDEVLGPLTAYQSQFPDI 63
Query: 508 R 510
+
Sbjct: 64 K 64
>SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Frame = +1
Query: 214 TLDDIFEXHLQNFNRQHQQSTRLQKEFNNYIRCIRAAQTASKSLMEAITEVY-ESGWSGH 390
T+D F + FN + L K ++Y+ + T + + I E Y ++
Sbjct: 1 TVDKSFNEEEKKFNNLEKTVKNLIKNVSSYVEQFQDTVTRQEVNGQNIQEYYLDASTCTE 60
Query: 391 DLLYVQAQNM--EVLWQDFSHKLGDQVLIPLNTYTNQFPEVRKKIEKRGRKLVDYDS 555
LY Q +L F ++ VL PLN+ F ++ I+KR K +DYDS
Sbjct: 61 VTLYQSTQQRISGILLDAFMGEVQYCVLTPLNSLLAMFQGPQRLIQKRHHKCLDYDS 117
>SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 220 DDIFEXHLQNFNRQHQQSTRLQKEFNNYIRCIRAAQTAS-KSLMEAITEVY 369
D IF + NF + HQ ++ L +F + + +AS +S MEA+T+ Y
Sbjct: 230 DRIFPERMLNFKKYHQDTSGLPYDFRSLVHYSNYDSSASGQSTMEALTDPY 280
>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2905
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 195 PGQGRPNSR*YIRXAPTEFQPTAPAVHQVAEGVQQLHKMYTSGADSFEV 341
PG G P I PTE+ P PAVH EG H +Y+ D+ +
Sbjct: 1723 PGTGTPQG---ITIEPTEYMPIEPAVHIDPEG----HNVYSGSTDAMRL 1764
>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 438 LLAQTRRPSTHTAQHVYEPVPRSQEKNRETWSQTR-GLRQSK--AQLPXLTG 584
+ A TR + QH EP R +R+T + TR G RQ + AQ P + G
Sbjct: 276 ITAATRAGARQPRQHAQEPAIRGNTHSRQTAAATRAGARQPRQHAQEPAIRG 327
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 360 GGLRERLVRSRPAVRPSSEHGGPLAGLLAQTRRPSTHTAQHVYEPVPRSQEKNRETWSQT 539
G + R PA+R ++ A A R+P QH EP R +R+T + T
Sbjct: 283 GARQPRQHAQEPAIRGNTHSRQTAAATRAGARQPR----QHAQEPAIRGNTHSRQTTAAT 338
Query: 540 R 542
R
Sbjct: 339 R 339
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 391 DLLYVQAQNMEVLWQDFSHKLGDQVLIPLNTYTNQFPEVRKKIEKRGRKLVDYDSQ 558
++L +A N V ++F L + V L ++ +RKK E+RG+ V+ D +
Sbjct: 50 EVLATEAINKYVTSKEFKESLSETVGFDLAESADEIQILRKKTEERGKIAVEVDGK 105
>SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1059
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +3
Query: 324 ADSFEVADGSDHGGLRERLVRSRPAV--RPSSEHGGPLAGLLAQTRRPSTHTAQHVYEPV 497
A F + D +D R L +P P+++ P+A A+ + H+A ++P+
Sbjct: 532 ASGFTLPDHTDPKKSRRTLFTGQPKSDDEPAAKKSKPIA---AEALKTFVHSATSPFKPI 588
Query: 498 PRSQEKNRETWSQTRGLRQS 557
P +E R + R ++S
Sbjct: 589 PAEEEMGRGPNTSPRNAKRS 608
>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1492
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 318 SGADSFEVADGSDHGGLRERLVRSRPAVRPSSEHGGPLAGLLAQTRRPSTHTAQHVYEPV 497
S + SF +A+G +G V + VRP + + +T ++ T+ H +EP
Sbjct: 1385 SKSKSF-IANGIQNGVNGNYPVEDKTWVRPDGPTFCQWSTVNGKTSGENSATSPHFHEPP 1443
Query: 498 PRSQEKNR 521
P+ Q +NR
Sbjct: 1444 PKEQAENR 1451
>SB_42523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 293 NSFCNLVDCWCCRLKFCRC 237
N+FCN WCC++K C
Sbjct: 225 NTFCNCKFHWCCKVKCMTC 243
>SB_2536| Best HMM Match : Arfaptin (HMM E-Value=0.93)
Length = 190
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = +1
Query: 280 LQKEFNNYIRCIRAAQTASKSLMEAITEVYESGWSGHDLLYVQAQNMEVLWQ--DFSHK- 450
+ K Y+ ++A A L +A + V + LL + Q +V+ + +HK
Sbjct: 43 IDKLITGYLDAMKAFCDAGSQLADAFSAVLKQT----PLLEITQQLKQVVEEIDHVAHKS 98
Query: 451 ---LGDQVLIPLNTYTNQFPEVRKKIEKRGRKLVDYDS 555
+ + +L L +T+ FP +R+ IE R +Y+S
Sbjct: 99 SVHVTNHILATLCDFTSTFPSLRRAIEAHKRNAQNYES 136
>SB_4878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/70 (18%), Positives = 33/70 (47%)
Frame = +1
Query: 247 NFNRQHQQSTRLQKEFNNYIRCIRAAQTASKSLMEAITEVYESGWSGHDLLYVQAQNMEV 426
+F R T+L+K + I + + +++++ +E + ++ + E+
Sbjct: 153 SFLRCEHSLTKLRKPHDEAAFQIVGIPSDEEDMLDSMMTAFEQSIKADEKPQIEEEAQEI 212
Query: 427 LWQDFSHKLG 456
LW+ ++ KLG
Sbjct: 213 LWRGYATKLG 222
>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
Length = 504
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 384 RSRPAVRPSS-----EHGGPLAGLLAQTRRPSTHTAQHVYEPVPRSQEKNRETWSQTRGL 548
RS+ RPSS E L L +T RP + Q P PRS+ +NR + S + +
Sbjct: 369 RSKSENRPSSSLAVREPPVLLLALSQRTARPPPRSNQRTARPPPRSKSENRPS-SSSLAV 427
Query: 549 RQSKAQLPXLT 581
R+ L L+
Sbjct: 428 REPPVLLLALS 438
>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1845
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 405 PSSEHGGPLAGLLAQTRRPSTHTAQHVYEPVPRSQEKNRE-TWSQTRGLRQSKAQLPXL 578
PS+E G ++ +A + P + + V P R + ++ T RGLR+S +LP +
Sbjct: 990 PSTEEGTCVSDGMANSVAPPSGETETVPSPPVRGTNRAKQITCPPKRGLRKSPRKLPVI 1048
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 211 RTLDDIFEXHLQNFNRQHQQSTRLQKEFNNYIRCIRAAQT 330
RTL+ + HL+ F +QST+++++ + +R +A T
Sbjct: 686 RTLETASQSHLKTFCGSRKQSTKIKQDMISPVRAKQAIPT 725
>SB_34884| Best HMM Match : RVT_1 (HMM E-Value=8.1e-25)
Length = 439
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 217 LDDIFEXHLQNFNRQHQQSTRLQKEFNNYIRCIR 318
L +F+ N NR HQ +TRL Y+ IR
Sbjct: 361 LPSVFKSFFTNINRIHQYNTRLASRKTYYLPKIR 394
>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
Length = 582
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 281 NLVDCWCCRLKFC-RCXSNISSRVRS-TLPRXCRSFS 177
N + CW C+ +FC +C I + ++ P C S
Sbjct: 544 NFMRCWACKTQFCYQCGKTIENGIKHFVAPGPCSQHS 580
>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 430 WQDFSHKLGDQVLIPLNTYTNQFPEVRKKIEKR 528
W DFS K + + LN YT +P++ ++ R
Sbjct: 173 WPDFSKKNMREDCLNLNIYTPAWPDISDSVQTR 205
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +1
Query: 328 TASKSLMEAITEVYESGWS--GHDLLYVQAQNMEVLWQDFSHK 450
T SK L I +VY+ WS G LL N ++W K
Sbjct: 171 TVSKMLRGHIEDVYDLAWSPDGTQLLSGSVDNSAIIWDAIKGK 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,321,065
Number of Sequences: 59808
Number of extensions: 370411
Number of successful extensions: 1103
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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