Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H12
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.0  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   5.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   5.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   5.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   5.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 453 RRPSTHTAQHVYEPVPRSQEKNRE 524
           RRPST  + +   P P S+ K++E
Sbjct: 49  RRPSTFGSSNEALPQPISKRKDKE 72


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 453 RRPSTHTAQHVYEPVPRSQEKNRE 524
           RRPST  + +   P P S+ K++E
Sbjct: 49  RRPSTFGSSNEALPQPISKRKDKE 72


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 531 TTFLDFFPDFGELVRIRV 478
           TT+ D   D+  L+R+RV
Sbjct: 96  TTYTDGSDDYSTLIRVRV 113


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 531 TTFLDFFPDFGELVRIRV 478
           TT+ D   D+  L+R+RV
Sbjct: 144 TTYTDGSDDYSTLIRVRV 161


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 531 TTFLDFFPDFGELVRIRV 478
           TT+ D   D+  L+R+RV
Sbjct: 144 TTYTDGSDDYSTLIRVRV 161


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 531 TTFLDFFPDFGELVRIRV 478
           TT+ D   D+  L+R+RV
Sbjct: 144 TTYTDGSDDYSTLIRVRV 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,514
Number of Sequences: 438
Number of extensions: 3118
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)