Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H12
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79020.1 68414.m09214 transcription factor-related similar to...    31   0.77 
At1g73860.1 68414.m08552 kinesin motor protein-related similar t...    31   0.77 
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing...    29   2.4  
At1g60540.1 68414.m06815 dynamin family protein similar to SP|Q9...    29   3.1  
At3g08760.1 68416.m01018 protein kinase family protein contains ...    28   4.1  
At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ...    28   5.4  
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ...    28   5.4  
At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family...    28   5.4  
At5g47940.1 68418.m05922 expressed protein                             27   7.2  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    27   9.5  

>At1g79020.1 68414.m09214 transcription factor-related similar to
           enhancer of polycomb (GI:3757890) [Drosophila
           melanogaster]; similar to enhancer of polycomb
           (GI:11907923) [Homo sapiens]
          Length = 453

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +3

Query: 288 GVQQLHKMYTSGADSFEVADGSDHGGLRERLVRSRPAVRPSS 413
           G Q     Y  G+   E+ D  DH   R   VR+RPAV PSS
Sbjct: 303 GFQPTTTSYKFGSSDDELMDSDDHTSTR---VRTRPAVIPSS 341


>At1g73860.1 68414.m08552 kinesin motor protein-related similar to
           kinesin-C GB:AAF04841 from [Strongylocentrotus
           purpuratus]
          Length = 1030

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
 Frame = +1

Query: 157 KHAGRAKEKLLQXLGKVDRTLDDIFEXHLQNFNRQHQQSTRLQKEFNNYIRCIRAAQTAS 336
           K+A   + K L+ +GK   +  +  E  ++   +  +++          I+ +       
Sbjct: 352 KNALEERVKELEQMGKEAHSAKNALEEKIKQLQQMEKETKTANTSLEGKIQELEQNLVMW 411

Query: 337 KSLMEAITEVYESG---WSGHDLLY---VQAQNMEVL-WQDFSHKLGDQVLIPLNTYTNQ 495
           K+ +  + +  ES    WS  +L Y   +  Q+  +L  + +S  +  ++L     YT+Q
Sbjct: 412 KTKVREMEKKSESNHQRWSQKELSYKSFIDNQSQALLELRSYSRSIKQEILKVQENYTDQ 471

Query: 496 FPEVRKKI 519
           F ++ KK+
Sbjct: 472 FSQLGKKL 479


>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
           protein similar to GCN4-complementing protein (GCP1)
           GI:6465806 from [Arabidopsis thaliana]
          Length = 850

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 421 EVLWQDFSHKLGDQVLIPLNTYTNQFPEVRKKIEKRGRKLVDYDSQRHSFXNLQ 582
           EVL     H L D++L  +N   ++  E RK+ +K     + YD  R  + +L+
Sbjct: 93  EVLRSQVEHMLSDRLLQFVNGDVHEVKEARKRFDK---ATITYDQAREKYLSLR 143


>At1g60540.1 68414.m06815 dynamin family protein similar to
           SP|Q91192 Interferon-induced GTP-binding protein Mx
           {Oncorhynchus mykiss}; contains Pfam profiles PF01031:
           Dynamin central region, PF00350: Dynamin family,
           PF02212: Dynamin GTPase effector domain
          Length = 648

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 475 LNTYTNQFPEVRKKIEKRGRKLVDYDSQR 561
           + TY++ FP+++  I++ GR L+    +R
Sbjct: 474 ITTYSDNFPQIQSSIKRAGRNLMSRTKER 502


>At3g08760.1 68416.m01018 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 557

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
 Frame = +3

Query: 351 SDHGGLRERLVRSRPAVRPSSEHGGPLAGLLA---------QTRRPSTHTAQHVYEPVPR 503
           S++GG  E   R+R    PSS HG     LLA         Q R P T T +   +P+P 
Sbjct: 59  SNNGGTGEMSSRARVMSAPSSIHGAAERDLLAGVYHDEQDEQPRDPRTSTKESSPQPLPL 118

Query: 504 SQEK---NRETWSQTRGLRQSKAQL 569
              +   + + W   +    S  +L
Sbjct: 119 PSPRTGSSLKNWGSFKSFNGSSGRL 143


>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
           alpha-glucosidase GI:2648032 from [Solanum tuberosum]
          Length = 921

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +1

Query: 349 EAITEVYESGWSGHDLLYVQAQNMEVLWQDFSHKLGDQVLIPLNTYTNQFPEVRKKIEKR 528
           E + +V +S +  HD+ Y      +VLW D  H  G +     +       E++KK+  +
Sbjct: 377 EDVAQV-DSKFDEHDIPY------DVLWLDIEHTDGKRYFTWDSVLFPHPEEMQKKLAAK 429

Query: 529 GRKLV 543
           GRK+V
Sbjct: 430 GRKMV 434


>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
           ornithine--oxo-acid aminotransferase, putative similar
           to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
           (Ornithine--oxo-acid aminotransferase) [Aspergillus
           nidulans] {Emericella nidulans}; contains Pfam profile
           PF00202: aminotransferase, class III
          Length = 475

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 442 SHKLGDQVLIPLNTYTNQFPEVRKKIEKRGR-KLVDYDSQ 558
           S  LG+++ I LN    QFP+  K++  RG    ++++S+
Sbjct: 351 SASLGEELRIQLNEIKKQFPKYIKEVRGRGLFNAIEFNSE 390


>At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family
           protein
          Length = 575

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 115 MAXSQGALIAQTVQKHAGRAKEKLLQXLGKVDRTLDDIFEXHLQNFNRQHQQSTRL 282
           M+ S G     ++  H  +  +K+ +  GK   + +DIF  +  +FN  H+ + +L
Sbjct: 1   MSSSDGGSSRVSIPYHLRKTLQKIREYTGK-QHSDEDIFAVYKDSFNDPHETAQKL 55


>At5g47940.1 68418.m05922 expressed protein
          Length = 749

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 457 DQVLIPLNTYTNQFPEVRKKIEKRGRKLVDYD 552
           DQ+L P+N+   +   V KK+E+ G+K  + D
Sbjct: 337 DQMLKPINSIDARLQLVEKKLEQLGKKSFESD 368


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 60  CIXLVSRAFSIWSCKSAXNGXKSRCVNRANSAKT 161
           C   V R+ +IWSC S  +     C+ R   A T
Sbjct: 226 CYDKVGRSANIWSCSSCYSIFHINCIKRWARAPT 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,961
Number of Sequences: 28952
Number of extensions: 240185
Number of successful extensions: 780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)