Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H09
(751 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62487 Cluster: DNA-directed RNA polymerase II subunit ... 292 5e-78
UniRef50_P38421 Cluster: DNA-directed RNA polymerase II subunit ... 202 7e-51
UniRef50_Q54P04 Cluster: RNA polymerase II core subunit; n=1; Di... 191 2e-47
UniRef50_A2Y4G4 Cluster: Putative uncharacterized protein; n=6; ... 190 2e-47
UniRef50_O14459 Cluster: DNA-directed RNA polymerase II subunit ... 184 3e-45
UniRef50_Q4P3H9 Cluster: Putative uncharacterized protein; n=1; ... 174 2e-42
UniRef50_P34087 Cluster: DNA-directed RNA polymerase II subunit ... 146 4e-34
UniRef50_Q0CNG9 Cluster: DNA-directed RNA polymerase II 19 kDa p... 139 6e-32
UniRef50_Q7RCA7 Cluster: RNA polymerase II subunit 7; n=8; Acono... 138 1e-31
UniRef50_Q8SRG5 Cluster: DNA-DIRECTED RNA POLYMERASE II 19kDa SU... 117 3e-25
UniRef50_Q7SH68 Cluster: Putative uncharacterized protein NCU026... 87 1e-24
UniRef50_A3FQ92 Cluster: DNA-directed RNA polymerase II, putativ... 103 5e-21
UniRef50_A6QRA1 Cluster: At4g14660; n=5; Magnoliophyta|Rep: At4g... 90 6e-17
UniRef50_Q98S95 Cluster: RNA polymerase II RPB7 subunit-like pro... 83 5e-15
UniRef50_A2F013 Cluster: RNA polymerase Rpb7, N-terminal domain ... 81 2e-14
UniRef50_A7I4V6 Cluster: DNA-directed RNA polymerase; n=1; Candi... 80 7e-14
UniRef50_Q8LE42 Cluster: RNA polymerase II fifth largest subunit... 79 1e-13
UniRef50_Q57840 Cluster: DNA-directed RNA polymerase subunit E';... 78 2e-13
UniRef50_A5UJM4 Cluster: DNA-dependent RNA polymerase, subunit E... 69 1e-10
UniRef50_Q8PZ98 Cluster: DNA-directed RNA polymerase subunit E';... 68 2e-10
UniRef50_UPI00015BAC65 Cluster: DNA-directed RNA polymerase, sub... 66 1e-09
UniRef50_Q8ZSV9 Cluster: DNA-directed RNA polymerase subunit E';... 66 1e-09
UniRef50_Q2FTM9 Cluster: DNA-directed RNA polymerase; n=1; Metha... 64 3e-09
UniRef50_Q8TVE1 Cluster: DNA-directed RNA polymerase subunit E';... 64 5e-09
UniRef50_A3H5M6 Cluster: DNA-directed RNA polymerase; n=1; Caldi... 64 5e-09
UniRef50_Q0DJV3 Cluster: Os05g0224700 protein; n=2; Oryza sativa... 63 6e-09
UniRef50_Q74MC3 Cluster: NEQ370; n=1; Nanoarchaeum equitans|Rep:... 62 1e-08
UniRef50_Q017Z0 Cluster: KIAA1665 protein; n=2; Ostreococcus|Rep... 62 1e-08
UniRef50_Q5UYS0 Cluster: DNA-directed RNA polymerase subunit E';... 61 3e-08
UniRef50_Q9YFJ0 Cluster: DNA-directed RNA polymerase subunit E; ... 60 6e-08
UniRef50_A1RX94 Cluster: DNA-directed RNA polymerase; n=1; Therm... 58 2e-07
UniRef50_Q4D3Y0 Cluster: RNA polymerase-like protein, putative; ... 57 4e-07
UniRef50_Q4PAG0 Cluster: Putative uncharacterized protein; n=1; ... 56 7e-07
UniRef50_A7PUL8 Cluster: Chromosome chr7 scaffold_31, whole geno... 55 2e-06
UniRef50_P39466 Cluster: DNA-directed RNA polymerase subunit E; ... 55 2e-06
UniRef50_Q97BH0 Cluster: DNA-directed RNA polymerase E'; n=6; Th... 55 2e-06
UniRef50_Q8U439 Cluster: DNA-directed RNA polymerase, subunit e'... 54 4e-06
UniRef50_O94285 Cluster: DNA-directed RNA polymerase III complex... 54 5e-06
UniRef50_UPI000150A069 Cluster: RNA polymerase Rpb7, N-terminal ... 53 9e-06
UniRef50_Q557J3 Cluster: Putative uncharacterized protein; n=2; ... 52 2e-05
UniRef50_Q9M9Y6 Cluster: F4H5.12 protein; n=2; Arabidopsis thali... 50 5e-05
UniRef50_UPI000049988A Cluster: DNA-directed RNA polymerase II s... 50 6e-05
UniRef50_A6QZA4 Cluster: Putative uncharacterized protein; n=1; ... 50 8e-05
UniRef50_Q4Q5F4 Cluster: RNA polymerase-like protein, putative; ... 49 1e-04
UniRef50_A1C3X4 Cluster: DNA-directed rna polymerase III 25 kD p... 48 2e-04
UniRef50_Q6C9G5 Cluster: Yarrowia lipolytica chromosome D of str... 46 8e-04
UniRef50_Q0UVV8 Cluster: Putative uncharacterized protein; n=1; ... 46 8e-04
UniRef50_A3GFY9 Cluster: Subunit of RNA polymerase III; n=2; Sac... 46 0.001
UniRef50_A2BJZ4 Cluster: DNA-directed RNA polymerase subunit E''... 46 0.001
UniRef50_A0CNJ0 Cluster: Chromosome undetermined scaffold_22, wh... 45 0.002
UniRef50_A0RW78 Cluster: DNA-directed RNA polymerase, subunit E'... 44 0.004
UniRef50_Q23645 Cluster: Putative uncharacterized protein; n=1; ... 43 0.009
UniRef50_Q9VTL6 Cluster: CG7339-PA; n=4; Diptera|Rep: CG7339-PA ... 42 0.012
UniRef50_Q5CSN4 Cluster: RPB7 subunit of the RNA polymerase III,... 42 0.012
UniRef50_A7TH37 Cluster: Putative uncharacterized protein; n=1; ... 42 0.021
UniRef50_Q5UQW1 Cluster: Putative DNA-directed RNA polymerase su... 41 0.037
UniRef50_P35718 Cluster: DNA-directed RNA polymerase III subunit... 40 0.049
UniRef50_Q6NML5 Cluster: At4g14520; n=2; Arabidopsis thaliana|Re... 40 0.086
UniRef50_Q55KZ6 Cluster: Putative uncharacterized protein; n=2; ... 39 0.11
UniRef50_Q55FA4 Cluster: RNA polymerase I subunit; n=1; Dictyost... 37 0.46
UniRef50_Q9Y535 Cluster: DNA-directed RNA polymerase III subunit... 37 0.46
UniRef50_A1AL89 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding ... 35 1.9
UniRef50_Q7RQI9 Cluster: DEAD/DEAH box helicase, putative; n=6; ... 34 3.3
UniRef50_A4EB74 Cluster: Putative uncharacterized protein; n=1; ... 33 5.7
UniRef50_A0DXK9 Cluster: Chromosome undetermined scaffold_69, wh... 33 5.7
UniRef50_Q7QGV1 Cluster: ENSANGP00000012567; n=2; Anopheles gamb... 33 7.5
UniRef50_Q54BA1 Cluster: Putative uncharacterized protein; n=1; ... 33 7.5
UniRef50_Q3S1L6 Cluster: Putative uncharacterized protein; n=1; ... 33 7.5
UniRef50_UPI0000499865 Cluster: DNA-directed RNA polymerase III ... 33 9.9
UniRef50_Q19X43 Cluster: Lipoate-protein ligase A type 2; n=2; P... 33 9.9
UniRef50_A7ANP4 Cluster: Putative uncharacterized protein; n=1; ... 33 9.9
UniRef50_Q2H964 Cluster: Putative uncharacterized protein; n=1; ... 33 9.9
>UniRef50_P62487 Cluster: DNA-directed RNA polymerase II subunit
RPB7; n=28; Bilateria|Rep: DNA-directed RNA polymerase
II subunit RPB7 - Homo sapiens (Human)
Length = 172
Score = 292 bits (717), Expect = 5e-78
Identities = 132/171 (77%), Positives = 150/171 (87%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MFYHISLEH ILLHP+YFGP LL VKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G+GFV+YPVKYKA+VFRPFKGEV+D +VTQVNKVG+F +IGP+ CFIS HSIP MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
PN NPPCYK+ ED VIQ++D IRLKIVGTRVD + IFAIG+L+ DYLGLV
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLV 171
>UniRef50_P38421 Cluster: DNA-directed RNA polymerase II subunit
RPB7; n=16; Eukaryota|Rep: DNA-directed RNA polymerase
II subunit RPB7 - Arabidopsis thaliana (Mouse-ear cress)
Length = 176
Score = 202 bits (493), Expect = 7e-51
Identities = 93/171 (54%), Positives = 125/171 (73%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF+HI LE + LHP++FG L E + KL DVEGTC+G++GFV+A+T ID IG GLI+
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G GFV +PVKY+ VVFRPFKGE+L+ +VT VNK+G FA+ GP++ F+S H IPD MEF
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
+ P Y + IQ+E +RLKI+GTRVDA+ IF +GT+ D+LG++
Sbjct: 121 AG-DMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVI 170
>UniRef50_Q54P04 Cluster: RNA polymerase II core subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase II core
subunit - Dictyostelium discoideum AX4
Length = 172
Score = 191 bits (465), Expect = 2e-47
Identities = 84/171 (49%), Positives = 120/171 (70%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF+H++LE + +HPK+ GP L Q+LY++VEGTCTG+YGF+I +T +D + G +
Sbjct: 1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVL 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G+V++ VKYKA++F+PFKGEVLD IVT+V +G FA+ GPL F+S IP M F
Sbjct: 61 ESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFD 120
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
PC+ S+ S I ++D +RL+I GTRVDA+ IFAIG++ DYLG++
Sbjct: 121 AQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGVI 171
>UniRef50_A2Y4G4 Cluster: Putative uncharacterized protein; n=6;
Eukaryota|Rep: Putative uncharacterized protein - Oryza
sativa subsp. indica (Rice)
Length = 265
Score = 190 bits (464), Expect = 2e-47
Identities = 83/159 (52%), Positives = 121/159 (76%)
Frame = +1
Query: 199 LHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPVKY 378
LHP++FGP L + + KL DVEGTC+G++GFV+A+T ++++G GLI+ G G+V +PVKY
Sbjct: 101 LHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIREGTGYVTFPVKY 160
Query: 379 KAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFCPNVNPPCYKSKQ 558
+ VVFRPFKGE+L+ +VT VNK+G FA+ GP++ F+S+H IPD MEF + + P Y +
Sbjct: 161 QCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF-QSGDVPNYTTSD 219
Query: 559 EDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
IQ++ +RLKI+GTRVDA+ IF IGT+ D+LG++
Sbjct: 220 GSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 258
>UniRef50_O14459 Cluster: DNA-directed RNA polymerase II subunit
RPB7; n=10; Ascomycota|Rep: DNA-directed RNA polymerase
II subunit RPB7 - Schizosaccharomyces pombe (Fission
yeast)
Length = 172
Score = 184 bits (447), Expect = 3e-45
Identities = 89/172 (51%), Positives = 118/172 (68%), Gaps = 2/172 (1%)
Frame = +1
Query: 166 FYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQID--NIGAGLI 339
F+ L I LHP YFGP++ + +K KL DVEGTC+G+YG++I V + +I G +
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62
Query: 340 QHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEF 519
GQGF + VKY+AV++RPF+GEV+D IVT VNK+G FA IGPL F+S H +P M+F
Sbjct: 63 VPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKF 122
Query: 520 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
P NPP Y ED VI++ +RLKIVGTR DA+ IFAI T+ DYLG++
Sbjct: 123 DPTANPPNYSG--EDQVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGVL 172
>UniRef50_Q4P3H9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 170
Score = 174 bits (424), Expect = 2e-42
Identities = 85/169 (50%), Positives = 113/169 (66%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF+ L H LHP YFGP ++E + QKL DVEGTCTGK+G++I V + ++G G +
Sbjct: 1 MFFLKHLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKHGYIIKVIGLVDVGQGKVI 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G G + Y+AVV +PFKGEV+D +T VNK+G FA++GPL F+S H IP +F
Sbjct: 61 PGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPLNIFVSSHLIPIEYKFQ 120
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLG 669
P NPP + S D +++ V R+KIVGTRVDA+ IFAIGT+ DYLG
Sbjct: 121 PESNPPEFVS-ASDRLVKGRKV-RIKIVGTRVDANEIFAIGTMKEDYLG 167
>UniRef50_P34087 Cluster: DNA-directed RNA polymerase II subunit
RPB7; n=6; Saccharomycetales|Rep: DNA-directed RNA
polymerase II subunit RPB7 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 171
Score = 146 bits (355), Expect = 4e-34
Identities = 74/173 (42%), Positives = 106/173 (61%), Gaps = 2/173 (1%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGA--GL 336
MF+ L I LHP +FGP++ + +K KL +VEG+CTGK+G+++ V DNI G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 337 IQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYME 516
I G + VKY+AVVF+PFKGEV+DG V ++ G Q+GP+K F++ H +P +
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT 120
Query: 517 FCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
F NPP Y+S ++ VI + IR+KI G S I AIG++ DYLG +
Sbjct: 121 FNAGSNPPSYQSSED--VITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLGAI 171
>UniRef50_Q0CNG9 Cluster: DNA-directed RNA polymerase II 19 kDa
polypeptide; n=7; Trichocomaceae|Rep: DNA-directed RNA
polymerase II 19 kDa polypeptide - Aspergillus terreus
(strain NIH 2624)
Length = 174
Score = 139 bits (337), Expect = 6e-32
Identities = 71/171 (41%), Positives = 102/171 (59%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF+ I LHP YFGP + E + +L + EG CTG + FVI V + +IG G +
Sbjct: 1 MFFLKEETKVISLHPSYFGPNVREYLINRLNEEEEGRCTGDH-FVICVMDMVDIGEGRVL 59
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G Y +KY+A++++PF+GE +D IVT V G+F GPL FI+ +IP +++
Sbjct: 60 PSSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLAVFIARKNIPSDIKWE 119
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
PN PP Y + D VI++ +RLKI+G + D + I AIGT+ DYLG V
Sbjct: 120 PNTVPPQY-TDHADQVIEKGTSLRLKILGVKPDVAAINAIGTIKEDYLGYV 169
>UniRef50_Q7RCA7 Cluster: RNA polymerase II subunit 7; n=8;
Aconoidasida|Rep: RNA polymerase II subunit 7 -
Plasmodium yoelii yoelii
Length = 193
Score = 138 bits (334), Expect = 1e-31
Identities = 72/187 (38%), Positives = 107/187 (57%), Gaps = 16/187 (8%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
M++ I +++ P GP+ + ++ L +EG CT KYG++I V +I + G +Q
Sbjct: 1 MYFVIEEWKNVIIKPSQLGPKYQQYIEDMLRNSIEGQCTEKYGYIICVIRIMHSEPGRVQ 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVL----------------DGIVTQVNKVGMFAQIGPL 474
G G ++ VKY+A+VF+PFK EVL D IVT VNK+G FAQ GPL
Sbjct: 61 DGTGMIVVKVKYQAIVFKPFKDEVLFKINKLINKLIKSFVLDAIVTDVNKLGFFAQAGPL 120
Query: 475 KCFISHHSIPDYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLI 654
K FIS +IP Y E+ + + PC+ S + I+ + +RLK+ G R D S +FAI T+
Sbjct: 121 KIFISRTAIPKYFEYNEDAHYPCFSSGSHN--IKPQTTVRLKLQGIRYDLSNMFAIATIN 178
Query: 655 GDYLGLV 675
+YLG +
Sbjct: 179 NEYLGCI 185
>UniRef50_Q8SRG5 Cluster: DNA-DIRECTED RNA POLYMERASE II 19kDa
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE II 19kDa SUBUNIT - Encephalitozoon
cuniculi
Length = 155
Score = 117 bits (282), Expect = 3e-25
Identities = 64/171 (37%), Positives = 100/171 (58%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF+ I L P Y GP + +++ L + VEG+C+ G+V+ V ID I I
Sbjct: 1 MFFVRDFVQNIHLSPNYLGPNIQALIEEYLLSKVEGSCSSS-GYVVMVLSIDEISESRII 59
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G ++ VKYKA+ +P KGEV+D V + NK+G+FA +GPL FIS+H IP+++
Sbjct: 60 L-TGETIFTVKYKALTLKPLKGEVIDANVVETNKMGVFASVGPLTVFISNHQIPNFL--- 115
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
++ I + +IRLKI+GT++D++ I+A+GTL D LG++
Sbjct: 116 ------------LENEITKNVMIRLKIIGTKIDSTRIYAVGTLNDDSLGII 154
>UniRef50_Q7SH68 Cluster: Putative uncharacterized protein
NCU02661.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU02661.1 - Neurospora crassa
Length = 169
Score = 87.4 bits (207), Expect(2) = 1e-24
Identities = 42/85 (49%), Positives = 54/85 (63%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF+ +LE + LHP YFG + E V KL DVEGTC G Y ++IA+ ++ G I
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKDVEGTCAGDY-YIIAIMDAFDVSEGRIL 59
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVL 417
G G + VKY+AVV+RPFKGEVL
Sbjct: 60 PGNGLAEFTVKYRAVVWRPFKGEVL 84
Score = 48.8 bits (111), Expect(2) = 1e-24
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +1
Query: 499 IPDYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLVP 678
+P+ + F PN PP + + D VI+ +R+KI G R + ++AIG++ GD+LGL P
Sbjct: 85 MPEEIHFDPNATPPQF-TNNADMVIEPGTHVRVKIGGLRTELGEMYAIGSINGDFLGLWP 143
>UniRef50_A3FQ92 Cluster: DNA-directed RNA polymerase II, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: DNA-directed
RNA polymerase II, putative - Cryptosporidium parvum
Iowa II
Length = 178
Score = 103 bits (247), Expect = 5e-21
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF+ + L I + P GP+ E + L + VEG YG+V+ V +I G +Q
Sbjct: 1 MFFFVELWRNISVKPSQLGPRYNEHIDDILRSQVEGQRAPPYGYVVCVIKIILKQPGRVQ 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFISHHSIPDYMEF 519
G ++ PVKY+A+V+RP KGEV+DG+V VN++G+ GPLK F+S ++P+ M +
Sbjct: 61 DSTGLIIVPVKYQAIVYRPIKGEVVDGVVESVNELGVIVDCGPLKRVFVSQSALPENMVY 120
Query: 520 CPNV---NPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLG 669
+ + Y + I++ +RL++ G V+ + A+ + D+LG
Sbjct: 121 KSGIDGQSSRIYIDTKTQIQIKQNSQVRLRLRG--VNNETLSAVAEMNSDFLG 171
>UniRef50_A6QRA1 Cluster: At4g14660; n=5; Magnoliophyta|Rep:
At4g14660 - Arabidopsis thaliana (Mouse-ear cress)
Length = 178
Score = 89.8 bits (213), Expect = 6e-17
Identities = 49/134 (36%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Frame = +1
Query: 277 TGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMF 456
T + G+ +AVT +D IG G I+ G V++PV + + F+ FKGE++ G+V +V K G+F
Sbjct: 43 TKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVF 102
Query: 457 AQIGPLK-CFISHHSIPDYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTR-VDASG 630
+ GP++ ++S+ +PDY ++ P NP K S IQ E +R+ ++G + ++
Sbjct: 103 MRCGPIENVYLSYTKMPDY-KYIPGENPIFMNEK--TSRIQVETTVRVVVIGIKWMEVER 159
Query: 631 IF-AIGTLIGDYLG 669
F A+ +L GDYLG
Sbjct: 160 EFQALASLEGDYLG 173
>UniRef50_Q98S95 Cluster: RNA polymerase II RPB7 subunit-like
protein; n=1; Guillardia theta|Rep: RNA polymerase II
RPB7 subunit-like protein - Guillardia theta
(Cryptomonas phi)
Length = 196
Score = 83.4 bits (197), Expect = 5e-15
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGA-GLI 339
M+ ++L + + K QL + +L T EG G G +I + IDN G I
Sbjct: 27 MYAIMTLNQNLFIPAKLLNNQLKSTLIAQLITLTEGLPFGNVGSIIMIINIDNQKLYGKI 86
Query: 340 QHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEF 519
G V++ V ++AVV + FKGE++D IV + G+FA G L FIS+ I +
Sbjct: 87 LPGFSSVLFKVNFQAVVLKIFKGEIIDAIVKNITSFGIFASAGILNIFISNKFIS--QDL 144
Query: 520 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLG 669
+ + K I++ D+IR KI+ + + I AIG + YLG
Sbjct: 145 ISQQSQTLFNFKNSTINIKKNDIIRCKILNLKYNTGSIQAIGCIDDKYLG 194
>UniRef50_A2F013 Cluster: RNA polymerase Rpb7, N-terminal domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
RNA polymerase Rpb7, N-terminal domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 81.4 bits (192), Expect = 2e-14
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 2/173 (1%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF+ + LEH + L P + + ++++L EG G ++ +T+I IG G +
Sbjct: 11 MFFEVELEHQLKLLPIFLSQGTSQTIEKQLKHQKEGQFMLGKGLILKITKIIEIGKGRVS 70
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G Y VK+KA+V RP++ V+D + +N+ + A GPL + + +F
Sbjct: 71 SRTGCASYSVKFKALVLRPYEDLVIDAKIMILNEFAIMANAGPLTVAVPKTLLEKDYDFE 130
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGT--RVDASGIFAIGTLIGDYLGLV 675
P YK K + + VIR+KI+ D I A G LI LG++
Sbjct: 131 PET--LTYKQKNGGKTLGSKTVIRVKIITAVPHKDQIHISATGNLIDPILGVI 181
>UniRef50_A7I4V6 Cluster: DNA-directed RNA polymerase; n=1;
Candidatus Methanoregula boonei 6A8|Rep: DNA-directed
RNA polymerase - Methanoregula boonei (strain 6A8)
Length = 213
Score = 79.8 bits (188), Expect = 7e-14
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
M+Y ++LE + + P G +L + + + L +EG+ + G IAVT+++++G G I
Sbjct: 1 MYYKMTLEDKVRVPPNRLGEKLDKVILEVLQEQLEGSIDKELGVFIAVTKVEHVGEGEIV 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPD-YMEF 519
G G V Y VK++ +V R EV++GIV + G F +GP+ + I D Y+ F
Sbjct: 61 PGDGGVYYDVKFEGLVLRLALQEVIEGIVVETTSFGAFISLGPIDAMLHVSQISDEYINF 120
Query: 520 C-PNVNPPCYKSKQEDSVIQEEDVIRLKIV 606
N C SK+ I D +R+++V
Sbjct: 121 DEKNARLICQDSKR---YIGVGDTVRVRVV 147
>UniRef50_Q8LE42 Cluster: RNA polymerase II fifth largest
subunit-like protein; n=4; core eudicotyledons|Rep: RNA
polymerase II fifth largest subunit-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 174
Score = 79.0 bits (186), Expect = 1e-13
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Frame = +1
Query: 277 TGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMF 456
T G++I T ++NIG G I+ G + +PV + + F+ FKGE++ G+V +V+K G+F
Sbjct: 42 TKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVF 101
Query: 457 AQIGPLK-CFISHHSIPDYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGT--RVDAS 627
+ GP + ++SH +P Y EF P NP + Q S IQ +R ++ T R
Sbjct: 102 LKSGPYEIIYLSHMKMPGY-EFIPGENP--FFMNQYMSRIQIGARVRFVVLDTEWREAEK 158
Query: 628 GIFAIGTLIGDYLG 669
A+ ++ GD LG
Sbjct: 159 DFMALASIDGDNLG 172
>UniRef50_Q57840 Cluster: DNA-directed RNA polymerase subunit E';
n=5; Methanococcales|Rep: DNA-directed RNA polymerase
subunit E' - Methanococcus jannaschii
Length = 187
Score = 78.2 bits (184), Expect = 2e-13
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
M+ + + + + P+ FG L E VK+ L EG GFV+++ + +IG G +
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSI-PDYMEF 519
HG G +PV ++ +V+ P E+++G V V + G F ++GPL I I DY+ +
Sbjct: 61 HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSY 120
Query: 520 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDA 624
P K+ V++ D +R +IV + A
Sbjct: 121 DP--KREAIIGKETGKVLEIGDYVRARIVAISLKA 153
>UniRef50_A5UJM4 Cluster: DNA-dependent RNA polymerase, subunit E,
RpoE; n=2; Methanobacteriaceae|Rep: DNA-dependent RNA
polymerase, subunit E, RpoE - Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861)
Length = 185
Score = 68.9 bits (161), Expect = 1e-10
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Frame = +1
Query: 181 LEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGFV 360
+E + + P F L E Q L G K G +I V +I+ IG G + G G
Sbjct: 4 IEDTVRIPPYRFDDPLEEVAIQTLNDTYNGRLDKKLGLLICVNEIEEIGEGRLIMGDGAS 63
Query: 361 MYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSI-PDYMEFCPNVNP 537
+ V + A+ F+P + EV+DG V ++ + G F +IGP+ + + DY+ + +
Sbjct: 64 YHNVVFNAIFFKPEQQEVIDGEVIEIAEFGAFVRIGPMDGLVHVSQVTDDYINY--DSKR 121
Query: 538 PCYKSKQEDSVIQEEDVIRLKIV 606
+K+ + + E D++R +IV
Sbjct: 122 GALLAKESNKTLDEGDLVRTRIV 144
>UniRef50_Q8PZ98 Cluster: DNA-directed RNA polymerase subunit E';
n=12; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit E' - Methanosarcina mazei (Methanosarcina
frisia)
Length = 194
Score = 68.1 bits (159), Expect = 2e-10
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
M+ + L + + P G +++ +K L +EG K G ++AV ID +G G I
Sbjct: 1 MYKLMKLVDTVRIPPTLLGEEIMPTIKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHIL 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSI-PDYMEF 519
G G V Y V ++A++F P E+++G V + G+F +GP+ + I D++ +
Sbjct: 61 VGDGAVYYDVTFEAIMFYPDLQEIIEGEVVEAVGFGVFIGMGPMDGLLHVSQITDDFISY 120
Query: 520 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVD 621
+ +K I E D +R +IV ++
Sbjct: 121 --DAKNARLVTKSGGKSIAEGDHVRARIVAVSIN 152
>UniRef50_UPI00015BAC65 Cluster: DNA-directed RNA polymerase,
subunit E'; n=1; Ignicoccus hospitalis KIN4/I|Rep:
DNA-directed RNA polymerase, subunit E' - Ignicoccus
hospitalis KIN4/I
Length = 177
Score = 65.7 bits (153), Expect = 1e-09
Identities = 41/161 (25%), Positives = 73/161 (45%)
Frame = +1
Query: 193 ILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPV 372
+ + P+ FG L + + L + EG + G ++ VT +D G I G G +
Sbjct: 11 VRIPPERFGEDLKKVALELLREEYEGVIDEELGIILTVTDVDISPEGYIVPGDGGTYHEA 70
Query: 373 KYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFCPNVNPPCYKS 552
+ + F+P + EV++GIV V K G++ IGP+ + + D F +
Sbjct: 71 TFTLLAFKPLRNEVVEGIVVNVTKNGIYVNIGPIDGMVHKAQLGD-ERFEYDAATGSMVG 129
Query: 553 KQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
+VI+ D++R +IV G+ ++ G YLG +
Sbjct: 130 TSTKTVIKRGDLVRARIVQIST-RRGLKVGMSMKGPYLGKI 169
>UniRef50_Q8ZSV9 Cluster: DNA-directed RNA polymerase subunit E';
n=4; Pyrobaculum|Rep: DNA-directed RNA polymerase
subunit E' - Pyrobaculum aerophilum
Length = 191
Score = 65.7 bits (153), Expect = 1e-09
Identities = 38/148 (25%), Positives = 67/148 (45%)
Frame = +1
Query: 166 FYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQH 345
F + E + + P FG L + +L + EG + G+++AV + G I
Sbjct: 3 FRLVEAEDYVRVPPTEFGKPLEDIALSQLKSRYEGKVLREVGYIVAVLNVKVGREGKIVF 62
Query: 346 GQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFCP 525
G G + + + F P GEV++G+V ++GM +IGP+ FI+ I D
Sbjct: 63 GDGGTYHRAVFTMLAFMPLDGEVVEGVVENAREMGMLVRIGPILGFINKIHIMDDPNIFF 122
Query: 526 NVNPPCYKSKQEDSVIQEEDVIRLKIVG 609
+ + Y ++ + DV+R +I G
Sbjct: 123 DASTKSYIGERTKRRVSVGDVVRARITG 150
>UniRef50_Q2FTM9 Cluster: DNA-directed RNA polymerase; n=1;
Methanospirillum hungatei JF-1|Rep: DNA-directed RNA
polymerase - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 190
Score = 64.5 bits (150), Expect = 3e-09
Identities = 33/115 (28%), Positives = 54/115 (46%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
M+Y + L + + P G L + L +EG+ + G IAVT++ IG G +
Sbjct: 1 MYYRLELIDKVRVPPHRLGEDLTTVILDVLQEQLEGSIDKEIGIFIAVTKVLRIGEGEMV 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPD 507
G G V Y V ++ + R E+++GIV + G F +GP+ + I D
Sbjct: 61 PGDGAVYYDVDFEGLALRLSLQEIIEGIVVETTSFGAFVSLGPIDAMLHVSQISD 115
>UniRef50_Q8TVE1 Cluster: DNA-directed RNA polymerase subunit E';
n=1; Methanopyrus kandleri|Rep: DNA-directed RNA
polymerase subunit E' - Methanopyrus kandleri
Length = 183
Score = 63.7 bits (148), Expect = 5e-09
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 6/159 (3%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTC-----TGK-YGFVIAVTQIDNI 324
M+ + LE + + P F + + V + L DVEG TG+ GFV+ V +I ++
Sbjct: 1 MYELVELETTVRIPPTQFTSDVEDAVLKALENDVEGKLFREDDTGEPIGFVVFVDEILDV 60
Query: 325 GAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIP 504
I G G + V+++A+VFRP + EV+ G VT+V + G F ++GPL + I
Sbjct: 61 ENEGIFPGDGASYHRVRFRALVFRPVEREVVVGEVTRVKEYGAFVRLGPLDGLLHVSQIL 120
Query: 505 DYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVD 621
D + ++ ++ DVI++ I+G ++
Sbjct: 121 DEYMYYDGAR-EALVGEETGRELKRGDVIKVMIIGVSLN 158
>UniRef50_A3H5M6 Cluster: DNA-directed RNA polymerase; n=1;
Caldivirga maquilingensis IC-167|Rep: DNA-directed RNA
polymerase - Caldivirga maquilingensis IC-167
Length = 211
Score = 63.7 bits (148), Expect = 5e-09
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 1/150 (0%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
+F I++E I + P F + + ++L ++ EG + G IAV + G+I
Sbjct: 17 VFRVITVEDYIRVPPSVFNEPIDKIAYEQLRSNYEGKVDRELGVFIAVFDVKVDKRGVIV 76
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPD-YMEF 519
+G G + V +KA+VF P E+++G V V + G +IG L FI + D +
Sbjct: 77 YGDGATYHKVSFKALVFVPLINEIVEGDVVDVKEYGAHVRIGALTAFIHRSQVMDENVVL 136
Query: 520 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVG 609
+ K + DV+R +IVG
Sbjct: 137 FDRQSGVFMGEKNRQKKVGRGDVVRARIVG 166
>UniRef50_Q0DJV3 Cluster: Os05g0224700 protein; n=2; Oryza
sativa|Rep: Os05g0224700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 782
Score = 63.3 bits (147), Expect = 6e-09
Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQ---LLEXVKQKLYTDVEGTCTGK-YGFVIAVTQIDNIGA 330
+F + + +L+ P P+ L + V L ++ K +G+ IAV+++ I
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61
Query: 331 GLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFISHHSIPD 507
G ++ G V++PV + + +P KGE+L G V ++ K G+F + GP++ F+S ++ D
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSD 121
Query: 508 YMEFCPNVNPPCYKSKQEDSVIQEEDVIRLK 600
Y ++ NP + S ++++ +R K
Sbjct: 122 Y-KYIGGENP---MFMNDHSKLEKDTAVRFK 148
>UniRef50_Q74MC3 Cluster: NEQ370; n=1; Nanoarchaeum equitans|Rep:
NEQ370 - Nanoarchaeum equitans
Length = 181
Score = 62.5 bits (145), Expect = 1e-08
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLE-XVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLI 339
MF+ +E + + P+ + +E +K L EG + G+V+++ I + G +
Sbjct: 1 MFFISEVEDYVRVDPRDLKEKTIEEAIKNALLKQYEGKINKQLGWVLSILDILDKSEGYL 60
Query: 340 QHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEF 519
+ G + Y V++K + ++P EV GI++ + G + IGP I I D +
Sbjct: 61 GYNDGGIYYKVRFKVLTWKPILKEVTLGIISNIVDFGAYVNIGPTDGLIHISQIMD--DI 118
Query: 520 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASG 630
++ +++ ED+++ KIVG + G
Sbjct: 119 VDYSKDKVLAGRKTKKILKIEDIVKAKIVGISIKPIG 155
>UniRef50_Q017Z0 Cluster: KIAA1665 protein; n=2; Ostreococcus|Rep:
KIAA1665 protein - Ostreococcus tauri
Length = 213
Score = 62.1 bits (144), Expect = 1e-08
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Frame = +1
Query: 163 MFYHISL-EHXILLHPKYFGPQLLEXVKQKLYT-DVEGTCTGKYGFVIAVTQIDNIGAGL 336
MF ++L + + + P G LE V Q+L + V+ G + + +I NI G
Sbjct: 9 MFQIVALSDSAVKIAPANLGKSTLEAVTQELESLYVDKVLAECGGLCVTLYEITNISGGA 68
Query: 337 IQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPL-KCFISHHSIPDYM 513
+ G+G V + V++K V+F+PF GEVL+G + ++ G IG FI ++ D
Sbjct: 69 VLSGEGCVCFEVEFKLVLFKPFTGEVLEGKLESSDEHGAHVSIGFFDDVFIPPSNMQDPS 128
Query: 514 EFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTR 615
E+ + + E ++ + +R ++VG+R
Sbjct: 129 EWDEDEKAWIWDYNGERIKLEVGEKVRFRVVGSR 162
>UniRef50_Q5UYS0 Cluster: DNA-directed RNA polymerase subunit E';
n=3; Halobacteriaceae|Rep: DNA-directed RNA polymerase
subunit E' - Haloarcula marismortui (Halobacterium
marismortui)
Length = 192
Score = 60.9 bits (141), Expect = 3e-08
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 1/154 (0%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
M+ + L + + P++ VK+ L +EG G V++V ++ +IG G +
Sbjct: 1 MYKRVRLRDTVEVPPRFLAEVSPGLVKRLLQEKLEGRMDEDVGSVVSVIEVHDIGTGAVL 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPD-YMEF 519
+ V Y ++ A+ F P EV+DG V +V G F IGP+ + I D Y+ +
Sbjct: 61 PNKPGVYYEAEFDALTFDPQMQEVVDGEVVEVVNFGAFIGIGPVDGLLHVSQISDEYLAY 120
Query: 520 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVD 621
+ S++ + + D +R +IV +D
Sbjct: 121 --DEENQQLASRESNRTLTVGDAVRARIVTKSID 152
>UniRef50_Q9YFJ0 Cluster: DNA-directed RNA polymerase subunit E;
n=1; Aeropyrum pernix|Rep: DNA-directed RNA polymerase
subunit E - Aeropyrum pernix
Length = 186
Score = 60.1 bits (139), Expect = 6e-08
Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 8/177 (4%)
Frame = +1
Query: 163 MFYHISLEHXILLHP-KYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLI 339
M+Y +E I + P + + L+ + +EG + G ++AV +G G+I
Sbjct: 1 MYYEYVVEEWIGMEPASIYSSEDLDKAALEHLRRLEGRIDEEMGVIVAVLDAKIVGDGII 60
Query: 340 Q--HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDY- 510
G + YPV+Y+ + F+P + E++ G+VT+ + G+ +GPL + + I D
Sbjct: 61 PPVSGDPSIYYPVRYRVLAFKPVQLEIVRGVVTRADDFGLVVNLGPLDGKVHRNQIMDEG 120
Query: 511 MEFCPNVNP-PCYKSKQEDSVIQEEDVIRLKIVGTRVDA--SGIFAIG-TLIGDYLG 669
+E P+ + SK+E I+ DV+R ++V + + I IG T+ YLG
Sbjct: 121 VELLPDRSGFVGLASKRE---IRVGDVVRARVVHVSRPSRTAQIIGIGLTMRQPYLG 174
>UniRef50_A1RX94 Cluster: DNA-directed RNA polymerase; n=1;
Thermofilum pendens Hrk 5|Rep: DNA-directed RNA
polymerase - Thermofilum pendens (strain Hrk 5)
Length = 222
Score = 58.4 bits (135), Expect = 2e-07
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Frame = +1
Query: 193 ILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPV 372
I + P+ FG L E + L EG G VI++ + G + G G +
Sbjct: 38 IRIPPRLFGQPLKEASLEILKESFEGRVVQGVGLVISILDAEVSEEGFLTWGDGASYHEA 97
Query: 373 KYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSI-PD-YMEFCPNVNPPCY 546
++ A+VF P EV++G V V +G+ ++GP++ F+ I P + +
Sbjct: 98 RFTALVFSPVNNEVVEGEVDLVENIGLTVRLGPVEGFVHKSQIYPSRNITYDRENGVVII 157
Query: 547 KSKQEDSVIQEEDVIRLKIVGTRVD 621
+ ++ I++ DV+R ++VG D
Sbjct: 158 QDEKGTRTIRKGDVVRGRVVGVSYD 182
>UniRef50_Q4D3Y0 Cluster: RNA polymerase-like protein, putative;
n=3; Trypanosoma|Rep: RNA polymerase-like protein,
putative - Trypanosoma cruzi
Length = 190
Score = 57.2 bits (132), Expect = 4e-07
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEG------TCTGKYGFVIAVTQ---- 312
MFY + L+ I + P G L + + L VEG G G V+ V Q
Sbjct: 1 MFYKMELQKIIRVEPHLLGRTLHRHLAKYLRHAVEGHPFQMPLLKGSNGEVVRVDQSSSA 60
Query: 313 -----IDNIGAGLIQH---GQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQI- 465
+D + L++ G V + + Y+A+VF+ +GEV+D +V V + G + +
Sbjct: 61 VIVAVLDILNTELLEGRVLDDGGVSFLLHYEALVFKLHRGEVVDLMVVAVEREGWWGDVL 120
Query: 466 GPLKCFISHHSIPDYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIG 645
G K +IS + + + + +K ++ +++R+++V + G+ AIG
Sbjct: 121 GVGKMYISRGQMGSEWVYESDGVEGIWITKDGSRSVKNGEIVRVRVVAETPQSEGVVAIG 180
Query: 646 TLIGDYLG 669
++IG YLG
Sbjct: 181 SMIGKYLG 188
>UniRef50_Q4PAG0 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 249
Score = 56.4 bits (130), Expect = 7e-07
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF +E I +HP FG L + ++ T G I++ I + G ++
Sbjct: 1 MFALAEIEDTISVHPSAFGQPSLTSISGQINTKYANKILVDVGLCISLFDILSCSEGKVR 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPL-KCFISHHSIP 504
G G + + V ++ +VFRPF EVL G + ++ G+ +G +I +H IP
Sbjct: 61 FGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEAGIRVSMGFFDDIYIPYHLIP 115
>UniRef50_A7PUL8 Cluster: Chromosome chr7 scaffold_31, whole genome
shotgun sequence; n=9; Magnoliophyta|Rep: Chromosome
chr7 scaffold_31, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 192
Score = 55.2 bits (127), Expect = 2e-06
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MFY +EH + L P L E +K +L + G I+V I +I G +
Sbjct: 1 MFYLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVIANLGLCISVYDIRSIDGGFVF 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPL-KCFISHHSIPDYMEF 519
G G Y V+++ V+FRPF GE++ + + + G+ +G +I H +P+
Sbjct: 61 PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPVHLMPNPCHC 120
Query: 520 CPN 528
PN
Sbjct: 121 EPN 123
>UniRef50_P39466 Cluster: DNA-directed RNA polymerase subunit E;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit E - Sulfolobus acidocaldarius
Length = 183
Score = 55.2 bits (127), Expect = 2e-06
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 2/173 (1%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF + + + + P+YFG + E + L + + G V+ + G I
Sbjct: 1 MFKLVRAKGIVRIPPEYFGQSVDEIAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFII 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSI-PDYMEF 519
G G + V++ +V+ P EV++G V+QV+ G++ +GP+ + I D ++F
Sbjct: 61 FGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYGVYVNMGPVDGLVHISQITDDNLKF 120
Query: 520 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIG-TLIGDYLGLV 675
+ N ++ IQ+ D +R I+ + + + I T+ YLG +
Sbjct: 121 --DSNRGILIGEKSKKSIQKGDRVRAMIISASMSSGRLPRIALTMKQPYLGKI 171
>UniRef50_Q97BH0 Cluster: DNA-directed RNA polymerase E'; n=6;
Thermoplasmatales|Rep: DNA-directed RNA polymerase E' -
Thermoplasma volcanium
Length = 195
Score = 54.8 bits (126), Expect = 2e-06
Identities = 36/122 (29%), Positives = 56/122 (45%)
Frame = +1
Query: 268 GTCTGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKV 447
G GKY VI++ +G G I HG G V VKY A+VF P E++DG V V K
Sbjct: 50 GVNEGKY-LVISIISTKAVGEGSIVHGDGGVYQEVKYSALVFYPEMQEIVDGEVVSVQKF 108
Query: 448 GMFAQIGPLKCFISHHSIPDYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDAS 627
G F + + + I D ++ + K ++ D +R++IV + +S
Sbjct: 109 GAFVKFSSFEGLLHISQIMD-DRIDVDLENKRFIGKDTKRDLKVGDKVRVRIVALNLASS 167
Query: 628 GI 633
+
Sbjct: 168 SV 169
>UniRef50_Q8U439 Cluster: DNA-directed RNA polymerase, subunit e';
n=5; Euryarchaeota|Rep: DNA-directed RNA polymerase,
subunit e' - Pyrococcus furiosus
Length = 189
Score = 54.0 bits (124), Expect = 4e-06
Identities = 34/148 (22%), Positives = 69/148 (46%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
M+ ++++ + + P F E K L EGT G ++++ ++ +I G+I
Sbjct: 1 MYKIVTVKDVVRIPPTMFTMDPKEAAKIILRETYEGTYDKDEGVILSILEVKDIKDGIII 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G G + V + +V+ P EV++G V V G F +IGP+ + + D
Sbjct: 61 PGDGATYHEVVFDVLVWEPKIHEVVEGYVADVMPFGAFIRIGPIDGLVHISQLMDDYVVY 120
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIV 606
N + K++ +++ D++R +I+
Sbjct: 121 DERNKQ-FVGKEKKYLLKIGDLVRARII 147
>UniRef50_O94285 Cluster: DNA-directed RNA polymerase III complex
subunit Rpc25; n=1; Schizosaccharomyces pombe|Rep:
DNA-directed RNA polymerase III complex subunit Rpc25 -
Schizosaccharomyces pombe (Fission yeast)
Length = 203
Score = 53.6 bits (123), Expect = 5e-06
Identities = 35/126 (27%), Positives = 54/126 (42%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF I +HP F E + ++++ G I V IG G+I+
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
+G G V ++ ++FRPF+GEV+ G + ++ G+ I F IP M F
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS----FFDDIFIPKDMLFD 116
Query: 523 PNVNPP 540
P V P
Sbjct: 117 PCVFRP 122
>UniRef50_UPI000150A069 Cluster: RNA polymerase Rpb7, N-terminal
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb7, N-terminal domain
containing protein - Tetrahymena thermophila SB210
Length = 173
Score = 52.8 bits (121), Expect = 9e-06
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Frame = +1
Query: 163 MFYHISLEHXIL-LHPKYFGPQL---------LEXVKQKLYTDVEGTCTGKYGFVIAVTQ 312
MFYH S IL +HP + G + + +K++L VEG + ++G++I V
Sbjct: 1 MFYHTSGLRTILQIHPTHMGMLIGNDKVNLNNNDLLKKELIEKVEGKKSNEHGYIILVVN 60
Query: 313 IDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCF-IS 489
+ + LI + GF+ +++ A+ F+P E +D +T++ + + +GP+ F +
Sbjct: 61 LRYMSKPLIDY-DGFIKVEIQFDALTFKPQLKEYIDIQITEIKQNHIAGSVGPMNIFYVP 119
Query: 490 HHSIPDYME 516
+ +P ++
Sbjct: 120 NRKLPQQLQ 128
>UniRef50_Q557J3 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 252
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/102 (24%), Positives = 52/102 (50%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF+ I++E + + P F ++ + ++ ++ G +A+ I G +
Sbjct: 1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVH 59
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
G G V+++ VVF+PFKGEVL+G++ + ++ + +G
Sbjct: 60 SGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLG 101
>UniRef50_Q9M9Y6 Cluster: F4H5.12 protein; n=2; Arabidopsis
thaliana|Rep: F4H5.12 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 204
Score = 50.4 bits (115), Expect = 5e-05
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MFY LEH + + P L + +K L G +++ I ++ G +
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G G Y V + VVFRPF GEV+ + + G+ +G F +P +
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLG----FFDDIYVPAPLMPK 116
Query: 523 PN-VNPPCYKSKQ 558
PN P Y KQ
Sbjct: 117 PNRCEPDPYNRKQ 129
>UniRef50_UPI000049988A Cluster: DNA-directed RNA polymerase II
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase II subunit - Entamoeba
histolytica HM-1:IMSS
Length = 193
Score = 50.0 bits (114), Expect = 6e-05
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Frame = +1
Query: 169 YHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHG 348
Y++ L + I + P++ + E K ++ G VI V + I G
Sbjct: 16 YNLILSYTIQVTPEHLNGGI-EDYLDKYISETTGYNKDYECIVICVLNVLEHKPIRIAEG 74
Query: 349 QGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFCPN 528
G V++ VK++A+V + + EV+DGI++ VNK G+ +G K + H + C
Sbjct: 75 TGNVVFSVKFEAIVQKIIRSEVVDGIISSVNKEGVTVDVGSWK---NIHVTASKVADCEY 131
Query: 529 VNPP-CYKSKQEDSVIQ 576
V CY+ K S Q
Sbjct: 132 VEQSGCYRDKDRTSQYQ 148
>UniRef50_A6QZA4 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 693
Score = 49.6 bits (113), Expect = 8e-05
Identities = 28/97 (28%), Positives = 43/97 (44%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF +L + + P+ F ++ + G I + GLI
Sbjct: 1 MFILTTLSDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIGFYDLLESSDGLIG 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGM 453
HG G V VK++ +VFRPFKGEV+ G +T + G+
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTENGI 97
>UniRef50_Q4Q5F4 Cluster: RNA polymerase-like protein, putative;
n=3; Leishmania|Rep: RNA polymerase-like protein,
putative - Leishmania major
Length = 199
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/140 (22%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Frame = +1
Query: 277 TGKYGFVIAVTQIDNIGAGLIQH---GQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKV 447
T + + +D + A +Q G V + + Y+A+V + +GEVLD +V+ V++
Sbjct: 54 TASKSSAVVIAVLDILNAETLQGKVLDDGSVSFRLTYEAMVLKLHRGEVLDLLVSDVDET 113
Query: 448 GMFAQI-GPLKCFISHHSIPDYM-----EFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVG 609
G +A + G K F++ + + + M E+ + S + I+++ ++RL+++
Sbjct: 114 GFWASVYGVNKLFVNRNQMGEDMKTGKSEWSFEAETAAWVSNDDRRSIKKDTMVRLRVIA 173
Query: 610 TRVDASGIFAIGTLIGDYLG 669
+ A+GT+ +LG
Sbjct: 174 ETPQSERGMAVGTIGAPFLG 193
>UniRef50_A1C3X4 Cluster: DNA-directed rna polymerase III 25 kD
polypeptide; n=11; Pezizomycotina|Rep: DNA-directed rna
polymerase III 25 kD polypeptide - Aspergillus clavatus
Length = 216
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/87 (28%), Positives = 40/87 (45%)
Frame = +1
Query: 193 ILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPV 372
I + P+ F ++ + K G I + GLI HG G V V
Sbjct: 34 IQISPEDFSKYSAVAIEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNV 93
Query: 373 KYKAVVFRPFKGEVLDGIVTQVNKVGM 453
K++ +VFRPFKGE++ G ++ + G+
Sbjct: 94 KFRLIVFRPFKGEIMLGKISSATQQGI 120
>UniRef50_Q6C9G5 Cluster: Yarrowia lipolytica chromosome D of strain
CLIB122 of Yarrowia lipolytica; n=3;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome D
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 202
Score = 46.4 bits (105), Expect = 8e-04
Identities = 26/97 (26%), Positives = 40/97 (41%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF I L P F L + + ++ G I V + +G G +
Sbjct: 1 MFILTRFTDLIRLDPTSFKKPLNDAIVDEINNCYANKIIDGVGLCICVYDLITVGEGQVM 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGM 453
G G + ++ VVFRPF GEVL+G ++ G+
Sbjct: 61 SGDGAAFVKITFRMVVFRPFVGEVLEGWISSCTAEGI 97
>UniRef50_Q0UVV8 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 212
Score = 46.4 bits (105), Expect = 8e-04
Identities = 24/101 (23%), Positives = 45/101 (44%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF +++ I + P+ F + +K + G I + + GLI
Sbjct: 1 MFILTTIQDLIQIKPQDFSKPSAQAIKDVVNEKYANKIVPGIGLCICMWDLLTATEGLIG 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQI 465
HG G V ++++ VFRPF+GE++ G + + G+ +
Sbjct: 61 HGTGLVNVNIEFRMTVFRPFRGEIIYGRIKSSSPDGIIIDL 101
>UniRef50_A3GFY9 Cluster: Subunit of RNA polymerase III; n=2;
Saccharomycetales|Rep: Subunit of RNA polymerase III -
Pichia stipitis (Yeast)
Length = 196
Score = 46.0 bits (104), Expect = 0.001
Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 2/149 (1%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF L + + P F + + +L + G V+ + + +I GL++
Sbjct: 1 MFILSELTDLVRIPPHTFNIPIQHSLTDELNKKLSNKIISNLGLVVTIWDLLDINDGLLK 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPL-KCFISHHSIPDYMEF 519
G G V+++ +V++PF GE++ G V+ + G+ ++ + FI I + EF
Sbjct: 61 PGDGGSYVEVRFRCIVWKPFIGEIITGWVSDCSAEGIKVRLDFFDEIFIPKRYIFENCEF 120
Query: 520 CPNVNPPCYKSKQE-DSVIQEEDVIRLKI 603
P +K ++ + I + IR ++
Sbjct: 121 KPVEKAWVWKPDEDSEFFIDINEKIRFRV 149
>UniRef50_A2BJZ4 Cluster: DNA-directed RNA polymerase subunit E'';
n=1; Hyperthermus butylicus DSM 5456|Rep: DNA-directed
RNA polymerase subunit E'' - Hyperthermus butylicus
(strain DSM 5456 / JCM 9403)
Length = 184
Score = 45.6 bits (103), Expect = 0.001
Identities = 29/149 (19%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
Frame = +1
Query: 193 ILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPV 372
+ + P FG L E + L G + G ++A+ + G + G G +
Sbjct: 11 VRIPPSLFGMSLEEAALKVLTEKYVGYVHPEMGVIVAIFDVKVSEEGRVIPGDGATYHDS 70
Query: 373 KYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHS--IPDYMEFCPNVNPPCY 546
+Y + F+P EV++G+V + + +GP++ I+H S + +++ F P +
Sbjct: 71 EYSVLAFKPIVKEVVEGVVVSIQQSFARISLGPVE-GIAHISQVMDEHVIFDPQRR--AF 127
Query: 547 KSKQEDSVIQEEDVIRLKIVGTRVDASGI 633
++ +++ D++R +++ + + I
Sbjct: 128 IGERTRRIVEVGDIVRTRVISVSMPSEPI 156
>UniRef50_A0CNJ0 Cluster: Chromosome undetermined scaffold_22, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_22,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 410
Score = 45.2 bits (102), Expect = 0.002
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 14/182 (7%)
Frame = +1
Query: 163 MFYHIS-LEHXILLHPKYFGPQLLEX--VKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAG 333
MFY + L+ + + P Y QL + + +++ +EG G++I + + N
Sbjct: 1 MFYVVKGLKTKLSIEPNYLD-QLKDQKFILEQIVQKLEGKYFDDVGYIICINKCMNYNQN 59
Query: 334 -------LIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISH 492
LI+ G V +K++A+VF+ + E++D V + ++A++GP+ I
Sbjct: 60 QDEQIDALIEE-DGTVKVVIKFEAIVFKVQEKEIVDVEVIKCEAQAVYAKLGPIDFIIPR 118
Query: 493 HSIPDYMEF----CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGD 660
+P F + YK Q++ VI++ +R+++ T + A L GD
Sbjct: 119 DKLPTNYTFSNVYLSLLTQESYKD-QDEEVIKQGTKLRVQVQKTHYKQGKLRAFAHLTGD 177
Query: 661 YL 666
L
Sbjct: 178 NL 179
>UniRef50_A0RW78 Cluster: DNA-directed RNA polymerase, subunit E';
n=2; Thermoprotei|Rep: DNA-directed RNA polymerase,
subunit E' - Cenarchaeum symbiosum
Length = 244
Score = 44.0 bits (99), Expect = 0.004
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 1/159 (0%)
Frame = +1
Query: 178 SLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGF 357
+L + + P FG L + L E G++I + G + G G
Sbjct: 34 TLVDVVRIPPSLFGTTLKKAAINILKEKYESMINADLGYIIMILDAKVEEMGKMIAGDGG 93
Query: 358 VMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSI-PDYMEFCPNVN 534
+ V++ A+ F P E++ G + + G F +IGP + + DY++ +V
Sbjct: 94 TFHKVEFNALTFYPKLQEIIQGEIVDITDFGAFVRIGPTDALLHLSQVMDDYLK--SDVK 151
Query: 535 PPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTL 651
+ Q ++ IR +I T V A+G +
Sbjct: 152 AGLIMANQSGRTLKVGSTIRARI--TAVSLGKAAAMGKI 188
>UniRef50_Q23645 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 239
Score = 42.7 bits (96), Expect = 0.009
Identities = 26/97 (26%), Positives = 42/97 (43%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF L + + P +K++L + G I V I+ IG I
Sbjct: 1 MFILSLLHDTVAIQPHQLSSDQQIVIKKRLNERLANKIIPDLGLCICVYDINEIGDSYIL 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGM 453
G+G VK++ +VFRPF EV++ V ++ G+
Sbjct: 61 PGEGDCRARVKFRMIVFRPFVDEVIEAKVIGSSRQGL 97
>UniRef50_Q9VTL6 Cluster: CG7339-PA; n=4; Diptera|Rep: CG7339-PA -
Drosophila melanogaster (Fruit fly)
Length = 240
Score = 42.3 bits (95), Expect = 0.012
Identities = 25/102 (24%), Positives = 47/102 (46%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF L+ + + P F +L++ V+ ++ + G IA+ I ++ +I
Sbjct: 1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
G G V ++ VVFRP G V+ G + ++ G+ +G
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLG 102
>UniRef50_Q5CSN4 Cluster: RPB7 subunit of the RNA polymerase III, OB
fold; n=2; Cryptosporidium|Rep: RPB7 subunit of the RNA
polymerase III, OB fold - Cryptosporidium parvum Iowa II
Length = 209
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +1
Query: 289 GFVIAVTQIDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
G +I D++ I + +G +++ V +K + FRP+ GEV++G+V + G+ +G
Sbjct: 69 GLMIYFVGFDDVDHADIDNDEGGLLFCVTFKMISFRPYVGEVIEGVVIDSDSTGLTVSLG 128
>UniRef50_A7TH37 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 222
Score = 41.5 bits (93), Expect = 0.021
Identities = 23/97 (23%), Positives = 41/97 (42%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF ++ + + P F + +L G I V + + G ++
Sbjct: 1 MFMLTKIKDLVRIPPDQFHRDSASSITHQLNNKFANKVIPHVGLCITVYDLLEVDEGQLK 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGM 453
G G V ++AVVF+PF GE++ G +T+ G+
Sbjct: 61 PGDGSSYIYVTFRAVVFKPFVGEIVTGWITKCTAEGI 97
>UniRef50_Q5UQW1 Cluster: Putative DNA-directed RNA polymerase
subunit L376; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative DNA-directed RNA polymerase subunit L376 -
Mimivirus
Length = 199
Score = 40.7 bits (91), Expect = 0.037
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
+++ LE + L P + + + L V+ T ++G V+ V +I G+I
Sbjct: 6 LYFQTKLEDKVSLLPSQMVGNMENYLLENLEAKVKDKVT-EHGIVLKVNRIIEYDYGIIS 64
Query: 343 HGQ--GFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYME 516
G +Y VKY+ ++ P K + +V + K + A+ GP+ I ++I D +
Sbjct: 65 KNNFSGTAIYRVKYECLICSPVKNLSIICLVENIVKGYIIAKNGPVIVAIPFNNI-DSDK 123
Query: 517 FCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVD 621
F YK+ + IQ+ D +++ I+ + +
Sbjct: 124 FQLTNGNIVYKNNSNN--IQKGDYVKVSIINIKTN 156
>UniRef50_P35718 Cluster: DNA-directed RNA polymerase III subunit
RPC8; n=5; Saccharomycetales|Rep: DNA-directed RNA
polymerase III subunit RPC8 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 212
Score = 40.3 bits (90), Expect = 0.049
Identities = 21/97 (21%), Positives = 41/97 (42%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF + + + P F + + +L G I + + + G ++
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGM 453
G G V ++AVVF+PF GE++ G +++ G+
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGI 97
>UniRef50_Q6NML5 Cluster: At4g14520; n=2; Arabidopsis thaliana|Rep:
At4g14520 - Arabidopsis thaliana (Mouse-ear cress)
Length = 200
Score = 39.5 bits (88), Expect = 0.086
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYF-GPQLLEXVKQKLYTDV--EGTCTGKYGFVIAVTQIDNIGAG 333
MF + + + + K+ G + + +L D+ E C ++GF + +T + +IG
Sbjct: 1 MFSEVEMARDVAICAKHLNGQSPHQPILCRLLQDLIHEKACR-EHGFYLGITALKSIGNN 59
Query: 334 LIQ-------HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFIS 489
H + +PV + F P +G++L G V +V G F + GPL+ ++S
Sbjct: 60 KNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLS 119
Query: 490 HHSIPDY 510
+P Y
Sbjct: 120 LLKMPHY 126
>UniRef50_Q55KZ6 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 199
Score = 39.1 bits (87), Expect = 0.11
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +1
Query: 289 GFVIAVTQIDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
G ++V I G + G G + Y V ++ ++F PF GEV+ G V K + +G
Sbjct: 14 GLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKTYIRVSLG 73
Query: 469 PLK-CFISHHSIPDYMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKI 603
+ +I +P + P + + ++S + +E ++ I
Sbjct: 74 FFQDIYIVPSLLPPNSAYDPQQKAFFWVAIDDESTLTQEQLLNTVI 119
>UniRef50_Q55FA4 Cluster: RNA polymerase I subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase I
subunit - Dictyostelium discoideum AX4
Length = 356
Score = 37.1 bits (82), Expect = 0.46
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +1
Query: 370 VKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQI-GPLKCFISHHSIPDYMEFCPNVNPPCY 546
+ K +VF+PFK ++L+G+V +V+ + + G + I +IP F + N +
Sbjct: 87 IHVKFLVFKPFKDQILNGVVKRVSTTHISLLVFGTISASIPKSNIPKSFAFDHSSN--MF 144
Query: 547 KSKQEDSVIQEEDVIRLKIVGTRVDASGI 633
+KQ + I I K++ D I
Sbjct: 145 MNKQTKATISVGTKIAFKVIDVSADRHNI 173
>UniRef50_Q9Y535 Cluster: DNA-directed RNA polymerase III subunit
RPC8; n=24; Eumetazoa|Rep: DNA-directed RNA polymerase
III subunit RPC8 - Homo sapiens (Human)
Length = 204
Score = 37.1 bits (82), Expect = 0.46
Identities = 22/102 (21%), Positives = 42/102 (41%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF + + + + P F +L + + ++L + G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>UniRef50_A1AL89 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding
domain protein; n=1; Pelobacter propionicus DSM
2379|Rep: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein - Pelobacter propionicus (strain DSM 2379)
Length = 435
Score = 35.1 bits (77), Expect = 1.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 32 NLVSNLQFACSVARCCCFCL-FLKNHNXTNLIAWXPHRNLSTAEKCS 169
N+ N++F C CCC+ L + H T +I + T EKCS
Sbjct: 247 NVRKNMRFVCHCCSCCCYLLRGISRHGFTGIILTSGYIAGITREKCS 293
>UniRef50_Q7RQI9 Cluster: DEAD/DEAH box helicase, putative; n=6;
Plasmodium (Vinckeia)|Rep: DEAD/DEAH box helicase,
putative - Plasmodium yoelii yoelii
Length = 2237
Score = 34.3 bits (75), Expect = 3.3
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -2
Query: 483 KTFERSYLRKHANLIYLCDNTI*NFSFE-WSKHNSFVFNRVHDKPLSMLYETSSDIVYLS 307
K FE + ++A +I+ N I + F+ W N++ + KPL M E SS +YL
Sbjct: 160 KLFENYNILRNAFIIHCKKNLIPYYIFDNWYNDNNYNIYIIKYKPLFMFVEDSSSFLYLF 219
Query: 306 YRYHKS 289
+++ S
Sbjct: 220 NKFYVS 225
>UniRef50_A4EB74 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 348
Score = 33.5 bits (73), Expect = 5.7
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 271 TCTGKYGFVIAVTQIDNIG--AGLIQHGQGFVMYPVKYKAVV 390
T TGK VIA+ +DN AGL+ +G VM P Y+ VV
Sbjct: 70 TLTGKQTHVIAIIILDNTNKWAGLVLNGMEQVMLPAGYQTVV 111
>UniRef50_A0DXK9 Cluster: Chromosome undetermined scaffold_69, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_69,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 229
Score = 33.5 bits (73), Expect = 5.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 427 VTQVNKVGMFAQIGPLKCFISHHSI-PDYMEFCPNVNPPCYKSKQEDSV 570
+ Q NK F G +KC ++HH I P EF +N YK+ E+ +
Sbjct: 30 LVQNNKHFEFLSSGKIKCLLTHHEILPTLQEFNNYLNGKSYKNAVENDI 78
>UniRef50_Q7QGV1 Cluster: ENSANGP00000012567; n=2; Anopheles gambiae
str. PEST|Rep: ENSANGP00000012567 - Anopheles gambiae
str. PEST
Length = 2184
Score = 33.1 bits (72), Expect = 7.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 266 STSVYSFCLTXSNSCGPKYFGCNKIXCSNEMW 171
+T+ + C +CGPK+F CN C +M+
Sbjct: 1066 TTAQANGCARTGKTCGPKFFNCNNTRCVPQMY 1097
>UniRef50_Q54BA1 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 716
Score = 33.1 bits (72), Expect = 7.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 313 IDNI-GAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQI 465
I NI G+G + +G G + + ++ + GE +D I TQVN++G F I
Sbjct: 248 ISNINGSGDVGNGGGGGVVKIIFRKTTIKNMIGEDVDSISTQVNRIGWFELI 299
>UniRef50_Q3S1L6 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 287
Score = 33.1 bits (72), Expect = 7.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 582 LFLYYAILLFTLITWRIYIR--AELHIVWY*MMGYKTFERSYLRKHANLIYL 433
LFL AI+LFTL W+ R +H++W + + TF+ + + A IY+
Sbjct: 150 LFLSIAIILFTLSMWKSRRRNWYFIHVIWQETIQFCTFQWTIIEFFAFFIYI 201
>UniRef50_UPI0000499865 Cluster: DNA-directed RNA polymerase III
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase III subunit - Entamoeba
histolytica HM-1:IMSS
Length = 200
Score = 32.7 bits (71), Expect = 9.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 289 GFVIAVTQIDNIGAGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIV 429
G + + I ++ I G G V Y V + ++F PF+GE+++G V
Sbjct: 6 GIGVTLYDIVSMTTPTIAIGTGDVYYEVVFNFIIFSPFQGELIEGRV 52
>UniRef50_Q19X43 Cluster: Lipoate-protein ligase A type 2; n=2;
Plasmodium falciparum|Rep: Lipoate-protein ligase A type
2 - Plasmodium falciparum
Length = 384
Score = 32.7 bits (71), Expect = 9.9
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -2
Query: 654 N*SPDCKNATRVNSRTNNL*SDHILFLYYAILLFTLITWRIYIRAELHIVWY*MMGY-KT 478
N S + T++N+ N+L +HILF Y ++ Y +I+ + G ++
Sbjct: 167 NTSKQIYDKTQINNEKNSLNKNHILFNQYFNYYENDYVYKDYDEHNKNIILKKVGGNAQS 226
Query: 477 FERSYLRKHANLIYLCD 427
F R+Y H + I+ CD
Sbjct: 227 FARNYFVHHTSYIWTCD 243
>UniRef50_A7ANP4 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 178
Score = 32.7 bits (71), Expect = 9.9
Identities = 24/102 (23%), Positives = 40/102 (39%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF+ +E I L + + K+ G G V+ V I I
Sbjct: 1 MFHFYVVEDLISLEVGEYLSDARSHLSAKVSDKYVDKVIGGVGLVVLVDDILVQSEPKIM 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
M+ ++ + +VF P + E+L GIVT + G+ +G
Sbjct: 61 PNDACAMFTLRLRILVFAPGRDELLRGIVTSSDVTGISVSLG 102
>UniRef50_Q2H964 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 848
Score = 32.7 bits (71), Expect = 9.9
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 256 TDVEGTCTGKYGFVIAVTQIDNIGA---GLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGI 426
T VE + +G YG V +DN G GL HG GF+ VVF F E DG+
Sbjct: 93 TAVEQSRSGVYGDVSFFHGLDNQGLENHGLENHGLGFMPSVEAPADVVFNQFNSEDYDGV 152
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 720,332,652
Number of Sequences: 1657284
Number of extensions: 14443701
Number of successful extensions: 35676
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 34209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35625
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -