Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H09
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp... 183 2e-47
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu... 53 4e-08
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s... 27 2.2
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 27 3.8
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 5.0
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.6
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 8.7
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 25 8.7
>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 183 bits (446), Expect = 2e-47
Identities = 89/172 (51%), Positives = 118/172 (68%), Gaps = 2/172 (1%)
Frame = +1
Query: 166 FYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQID--NIGAGLI 339
F+ L I LHP YFGP++ + +K KL DVEGTC+G+YG++I V + +I G +
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62
Query: 340 QHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEF 519
GQGF + VKY+AV++RPF+GEV+D IVT VNK+G FA IGPL F+S H +P M+F
Sbjct: 63 VPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKF 122
Query: 520 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
P NPP Y ED VI++ +RLKIVGTR DA+ IFAI T+ DYLG++
Sbjct: 123 DPTANPPNYSG--EDQVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGVL 172
>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 53.2 bits (122), Expect = 4e-08
Identities = 35/126 (27%), Positives = 54/126 (42%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF I +HP F E + ++++ G I V IG G+I+
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
+G G V ++ ++FRPF+GEV+ G + ++ G+ I F IP M F
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS----FFDDIFIPKDMLFD 116
Query: 523 PNVNPP 540
P V P
Sbjct: 117 PCVFRP 122
>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 27.5 bits (58), Expect = 2.2
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Frame = +1
Query: 289 GFVIAVTQIDNIG-AGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQV--NKVGMFA 459
G V+A I + + + + F V+ +VF P KG+ L+G + V + +G+
Sbjct: 46 GIVLAYDNIRFLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLI 105
Query: 460 QIGPLKCFISHHSIP-DYMEFCPNVNPPCYKSKQED-SVIQEEDVIRLKIVGTRVDASGI 633
+G I SIP D++ P+ + K D ++++ + + G + +A
Sbjct: 106 -LGIFNASIPRKSIPKDWIFIEPDTTEEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLT 164
Query: 634 FAIGTL 651
GTL
Sbjct: 165 MVQGTL 170
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 166 FYHISLEHXILLHPKYF-GPQLLEXVKQKLYT 258
FYH +E+ + + +YF GP+LL ++ Y+
Sbjct: 185 FYHAGMEYNVRVASRYFKGPELLVDFREYDYS 216
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -3
Query: 275 QVPSTSVYSFCLTXSNSCGPKYFGCNKIXCSNEMW*NIFQRW 150
Q+ + +S +S P YF + E+W N+F+ W
Sbjct: 856 QIETFKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNNLFEDW 897
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 320 LSI*VTAITNPYLPVQVPSTSVYSFCLTXSNSCG-PKYFGCNKI 192
L+I TAI + +LP+++ T+ S+ +SC P F NK+
Sbjct: 472 LTIPHTAINDSWLPMKLKETNAISYYRKTCSSCKYPFQFFINKL 515
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 135 LIVICPPLKNVLPHFIGARNFVTSEIFRS 221
LI+ PL+N LP NFV +IF S
Sbjct: 1022 LILTGTPLQNNLPELWALLNFVLPKIFNS 1050
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 47 LQFACSVARCCCFCLFLKNHNXTNLIAWXPHRNLSTAEKCSTTFHWSTXFCYI 205
L FA SV+ C F ++K H + + W N + F + T F +I
Sbjct: 113 LTFAVSVSCLCLF--YIKGHASSIRLQWIASPNAYELPSLNERFVYMTYFSHI 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,760
Number of Sequences: 5004
Number of extensions: 65435
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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