Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H09
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0244 - 19344418-19344483,19344961-19345029,19345355-193454...   203   1e-52
05_01_0416 + 3283403-3283930                                           80   2e-15
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753...    63   3e-10
07_03_0362 - 17217515-17217604,17217690-17217779,17217866-172179...    54   9e-08
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471...    30   1.7  
09_04_0109 - 14674980-14675004,14675861-14676468                       29   5.2  
04_03_0664 + 18501248-18502802,18503370-18505054                       29   5.2  
01_06_0249 + 27868897-27871599                                         28   6.9  

>05_04_0244 -
           19344418-19344483,19344961-19345029,19345355-19345420,
           19345735-19345785,19345892-19346057,19346148-19346263
          Length = 177

 Score =  203 bits (495), Expect = 1e-52
 Identities = 89/171 (52%), Positives = 129/171 (75%)
 Frame = +1

Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
           MF+HI LE  + LHP++FGP L + +  KL  DVEGTC+G++GFV+A+T ++++G GLI+
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
            G G+V +PVKY+ VVFRPFKGE+L+ +VT VNK+G FA+ GP++ F+S+H IPD MEF 
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF- 119

Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
            + + P Y +      IQ++  +RLKI+GTRVDA+ IF IGT+  D+LG++
Sbjct: 120 QSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170


>05_01_0416 + 3283403-3283930
          Length = 175

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
 Frame = +1

Query: 163 MFYHISLEHXILLHPKYFGPQ---LLEXVKQKLYTDVEGTCTGK-YGFVIAVTQIDNIGA 330
           +F  + +   +L+ P    PQ   L + V  +L  D+      K +G+ IAV+++  I  
Sbjct: 2   VFLKVEMSLNVLISPSQLSPQGLLLRKAVIVRLLEDIANRKASKDHGYYIAVSELKAISE 61

Query: 331 GLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFISHHSIPD 507
           G ++   G V++PV +  +  +P KGEVL G V ++ K G+F + GP++  F+S  ++ D
Sbjct: 62  GKVRELTGDVLFPVTFTCITQKPMKGEVLVGSVDKILKHGIFLKSGPIESIFLSEKTMSD 121

Query: 508 YMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTR-VDASGIF-AIGTLIGDYLG 669
           + ++    N        E S ++++ V+R K++G R ++A   F  + TL GDYLG
Sbjct: 122 F-KYIGGENA---VFMNEHSKLEKDTVVRFKVMGFRWMEADRQFQLLATLAGDYLG 173


>05_03_0030 +
           7529814-7530257,7530409-7530462,7531605-7532793,
           7532861-7533522
          Length = 782

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
 Frame = +1

Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGK----YGFVIAVTQIDNIGA 330
           +F  + +   +L+ P    P+ L   K  + + +E     K    +G+ IAV+++  I  
Sbjct: 2   VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61

Query: 331 GLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFISHHSIPD 507
           G ++   G V++PV +  +  +P KGE+L G V ++ K G+F + GP++  F+S  ++ D
Sbjct: 62  GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSD 121

Query: 508 YMEFCPNVNPPCYKSKQEDSVIQEEDVIRLK 600
           Y ++    NP       + S ++++  +R K
Sbjct: 122 Y-KYIGGENP---MFMNDHSKLEKDTAVRFK 148


>07_03_0362 -
           17217515-17217604,17217690-17217779,17217866-17217935,
           17218362-17218425,17219117-17219204,17219631-17219726,
           17219858-17219968
          Length = 202

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 32/117 (27%), Positives = 56/117 (47%)
 Frame = +1

Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
           MF    +EH + + P      L++ +K +L            G  ++V  I ++  G I 
Sbjct: 1   MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 60

Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYM 513
            G+G   Y V ++ ++FRPF GEVL G ++  ++ G+   +     F S  SIP ++
Sbjct: 61  PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLD----FFSDISIPGHL 113


>12_02_0699 +
           22245933-22246213,22246493-22246575,22246844-22247125,
           22248725-22248986,22250146-22251781,22251910-22252416
          Length = 1016

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 399 WSKHNSFVFNRVHDKPLSMLYETSSDIVYLSYRY 298
           W +HN+ VFN + +    +L   +SDI   S+RY
Sbjct: 183 WKRHNNKVFNSLDEPAKLVLRRCASDIDIWSHRY 216


>09_04_0109 - 14674980-14675004,14675861-14676468
          Length = 210

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 398 GLNTTALYLTGYMTNPCPCCMRPAPILSI*VTAITNPYLPVQVPST 261
           G  T   + T  + N     +RP+P++S    A T+P LP+ VP+T
Sbjct: 117 GARTIGEWGTTPLPNAIDKPLRPSPLISGRRQASTSPTLPLTVPAT 162


>04_03_0664 + 18501248-18502802,18503370-18505054
          Length = 1079

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
 Frame = -3

Query: 395 LNTTALYLTGYMTNPCPCCMRPAPILSI*VTAITN----PYLPV--QVPSTS-VYSFCLT 237
           +N T L + GY  +  PC +    I+++    I+N     +LP   ++PS   +Y  CL 
Sbjct: 597 MNLTKLKIKGYNGSRSPCWLGNTTIINLTYLYISNCSYWQHLPPLGELPSLKYLYLICLN 656

Query: 236 XSNSCGPKYFGCNK 195
                   ++GC +
Sbjct: 657 SVKRIDSSFYGCER 670


>01_06_0249 + 27868897-27871599
          Length = 900

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 267 RHLYWQIWICDSGNSNRQYRSWSHTTWTRVCHVPC 371
           R LY   ++ D   + R Y  WSH T   + HV C
Sbjct: 247 RRLYKLEYMVDDPLAPRGYNMWSHATRMYINHVHC 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,306,453
Number of Sequences: 37544
Number of extensions: 391506
Number of successful extensions: 897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)