Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H09
(751 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52427-1|AAB96827.1| 172|Homo sapiens RNA polymerase II seventh... 292 8e-79
U20659-1|AAA86500.1| 172|Homo sapiens RNA polymerase II subunit... 292 8e-79
BC112164-1|AAI12165.1| 172|Homo sapiens DNA directed RNA polyme... 292 8e-79
BC112162-1|AAI12163.1| 172|Homo sapiens DNA directed RNA polyme... 292 8e-79
CR456459-1|CAG30345.1| 204|Homo sapiens dJ347H13.5 protein. 37 0.067
BC088367-1|AAH88367.1| 204|Homo sapiens polymerase (RNA) III (D... 37 0.067
AY092087-1|AAM18217.1| 204|Homo sapiens RNA polymerase III subu... 37 0.067
AL023553-2|CAB46023.1| 204|Homo sapiens protein ( hondrial acon... 37 0.067
AB051452-1|BAB33335.1| 217|Homo sapiens KIAA1665 protein protein. 37 0.067
>U52427-1|AAB96827.1| 172|Homo sapiens RNA polymerase II seventh
subunit protein.
Length = 172
Score = 292 bits (717), Expect = 8e-79
Identities = 132/171 (77%), Positives = 150/171 (87%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MFYHISLEH ILLHP+YFGP LL VKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G+GFV+YPVKYKA+VFRPFKGEV+D +VTQVNKVG+F +IGP+ CFIS HSIP MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
PN NPPCYK+ ED VIQ++D IRLKIVGTRVD + IFAIG+L+ DYLGLV
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLV 171
>U20659-1|AAA86500.1| 172|Homo sapiens RNA polymerase II subunit
hsRPB7 protein.
Length = 172
Score = 292 bits (717), Expect = 8e-79
Identities = 132/171 (77%), Positives = 150/171 (87%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MFYHISLEH ILLHP+YFGP LL VKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G+GFV+YPVKYKA+VFRPFKGEV+D +VTQVNKVG+F +IGP+ CFIS HSIP MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
PN NPPCYK+ ED VIQ++D IRLKIVGTRVD + IFAIG+L+ DYLGLV
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLV 171
>BC112164-1|AAI12165.1| 172|Homo sapiens DNA directed RNA
polymerase II polypeptide G protein.
Length = 172
Score = 292 bits (717), Expect = 8e-79
Identities = 132/171 (77%), Positives = 150/171 (87%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MFYHISLEH ILLHP+YFGP LL VKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G+GFV+YPVKYKA+VFRPFKGEV+D +VTQVNKVG+F +IGP+ CFIS HSIP MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
PN NPPCYK+ ED VIQ++D IRLKIVGTRVD + IFAIG+L+ DYLGLV
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLV 171
>BC112162-1|AAI12163.1| 172|Homo sapiens DNA directed RNA
polymerase II polypeptide G protein.
Length = 172
Score = 292 bits (717), Expect = 8e-79
Identities = 132/171 (77%), Positives = 150/171 (87%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MFYHISLEH ILLHP+YFGP LL VKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 522
G+GFV+YPVKYKA+VFRPFKGEV+D +VTQVNKVG+F +IGP+ CFIS HSIP MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 523 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYLGLV 675
PN NPPCYK+ ED VIQ++D IRLKIVGTRVD + IFAIG+L+ DYLGLV
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLV 171
>CR456459-1|CAG30345.1| 204|Homo sapiens dJ347H13.5 protein.
Length = 204
Score = 37.1 bits (82), Expect = 0.067
Identities = 22/102 (21%), Positives = 42/102 (41%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF + + + + P F +L + + ++L + G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>BC088367-1|AAH88367.1| 204|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide H (22.9kD) protein.
Length = 204
Score = 37.1 bits (82), Expect = 0.067
Identities = 22/102 (21%), Positives = 42/102 (41%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF + + + + P F +L + + ++L + G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>AY092087-1|AAM18217.1| 204|Homo sapiens RNA polymerase III subunit
RPC8 protein.
Length = 204
Score = 37.1 bits (82), Expect = 0.067
Identities = 22/102 (21%), Positives = 42/102 (41%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF + + + + P F +L + + ++L + G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>AL023553-2|CAB46023.1| 204|Homo sapiens protein ( hondrial
aconitase 2, the gene Statin S).).
Length = 204
Score = 37.1 bits (82), Expect = 0.067
Identities = 22/102 (21%), Positives = 42/102 (41%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF + + + + P F +L + + ++L + G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>AB051452-1|BAB33335.1| 217|Homo sapiens KIAA1665 protein protein.
Length = 217
Score = 37.1 bits (82), Expect = 0.067
Identities = 22/102 (21%), Positives = 42/102 (41%)
Frame = +1
Query: 163 MFYHISLEHXILLHPKYFGPQLLEXVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 342
MF + + + + P F +L + + ++L + G I + I + +
Sbjct: 14 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 73
Query: 343 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 468
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 74 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 115
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,227,570
Number of Sequences: 237096
Number of extensions: 2421922
Number of successful extensions: 4729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4729
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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