Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H08
         (500 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    25   1.9  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   2.5  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    24   3.3  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   4.4  

>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
            protein.
          Length = 988

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 195  TAATHPSSPGMTRLQLFDHRQYWISCLHPDCH*FLLYRYHPTFFLR 58
            T A  P +PG+   +L      W+S  H +   FL        FLR
Sbjct: 878  TGAGQPGAPGLKTRRLIPDINLWVSRKHGEVDFFLTQLLTGHGFLR 923


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 422  ALIITLHIVFFIFIVCLTILLLFSITIGFILF 327
            AL+  +  +F + +VCL   L+F+I +G  LF
Sbjct: 1426 ALVQAIPSIFNVLLVCLIFWLIFAI-MGVQLF 1456


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 380 VCLTILLLFSITIGFILFIFGVITAGLVILTVGCRLYVTF*ILFFCIW 237
           V L I +L S+T+ F+L    +    L +  +G  L  T  ++   +W
Sbjct: 277 VTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVW 324


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 63   GKMSGDTDKAKISDNQDEDKKSSTGDGQTTEDES 164
            G+   + D     D+ D+D  ++TG+G   E ++
Sbjct: 1820 GEDGNEDDDEDDEDDDDDDDDTTTGEGNEHEADN 1853


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 371,556
Number of Sequences: 2352
Number of extensions: 5899
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44823054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)