Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H08
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    29   0.036
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.34 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.4  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.4  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.4  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 0.036
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
 Frame = -1

Query: 344 IGFILFIFGVITA--GLVILTVGCRLYVTF*ILFFCIWLIYISVTLGLRILKPQRLTLRV 171
           I ++LFIF  + A  GL ILT+G  +++          ++ +S  +   +  P  +TL V
Sbjct: 8   IKYLLFIFNFVFAVCGLGILTLGVLIHLQ---------ILGVSKQIETGLAFPS-ITLIV 57

Query: 170 LG*LVF--------------SCLTIASTGFLVFILI----VTDFCFIGITRHFSYEEIES 45
           LG ++F               C+TI    FL+FIL+    V  + FI +    ++  I  
Sbjct: 58  LGSIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISE 117

Query: 44  EFQASSN 24
           ++Q   N
Sbjct: 118 KYQEIFN 124


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
 Frame = +3

Query: 63  GKMSGDTDKA--KISDNQDEDKKSSTG-DGQTTEDESSQDSKGESLRFQDSEAQGNADVD 233
           G  + D   A  + ++NQ+ D +++   +G    D    D+K    R  D++  GN   D
Sbjct: 428 GNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQND 487

Query: 234 QP---DAKEENLEGDVKTTAN 287
                + +  N + D K   N
Sbjct: 488 NKQNGNRQNGNKQNDNKQNGN 508



 Score = 23.8 bits (49), Expect = 1.0
 Identities = 14/59 (23%), Positives = 23/59 (38%)
 Frame = +3

Query: 93  KISDNQDEDKKSSTGDGQTTEDESSQDSKGESLRFQDSEAQGNADVDQPDAKEENLEGD 269
           K + N+  D K +   G         D+K    R  D++  GN   D  + + +N   D
Sbjct: 479 KQNGNRQNDNKQN---GNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRND 534


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 380 VCLTILLLFSITIGFILFIFGVITAGLVILTVGCRLYVTF*ILFFCIWL 234
           +C +ILL  S+T+ F+L    +    L I  +G  L  T  ++   IW+
Sbjct: 283 LCSSILL--SLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILVTLSIWI 329


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 141 GQTTEDESSQDSKGESLRFQDSEAQGNADVDQPD 242
           G+ + +E   + K ++ RFQDS ++    +D P+
Sbjct: 119 GKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPE 152


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 141 GQTTEDESSQDSKGESLRFQDSEAQGNADVDQPD 242
           G+ + +E   + K ++ RFQDS ++    +D P+
Sbjct: 119 GKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPE 152


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 141 GQTTEDESSQDSKGESLRFQDSEAQGNADVDQPD 242
           G+ + +E   + K ++ RFQDS ++    +D P+
Sbjct: 119 GKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPE 152


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 155 FSCLTIASTGFLVFILI 105
           FS L++   GFL  ILI
Sbjct: 20  FSLLSVLLVGFLFLILI 36


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 266 TF*ILFFCIWLIYIS 222
           +F +L  C W+IY++
Sbjct: 479 SFGLLNICYWVIYVT 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,107
Number of Sequences: 438
Number of extensions: 1704
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)