Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H06
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 34 0.085
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 31 0.80
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 31 1.1
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 31 1.1
05_04_0131 + 18290201-18290650,18291474-18291626,18291950-182920... 30 1.8
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 29 4.2
09_04_0506 - 18188785-18190599 28 5.6
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 28 5.6
02_02_0637 - 12491706-12492575,12492580-12492657 28 5.6
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 7.4
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 28 7.4
08_02_0377 + 16481232-16481361,16482501-16482547,16482634-164827... 27 9.8
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 27 9.8
07_01_0543 + 4008439-4008808,4009209-4009274,4009409-4009584 27 9.8
06_01_0234 - 1784498-1784770 27 9.8
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 27 9.8
03_06_0533 + 34565062-34565439 27 9.8
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 34.3 bits (75), Expect = 0.085
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 244 ASAA*STVRLVPSD-SKREYCPTTLSPTRVSCWLLTSPVWGSD 119
+S A T+ L S+ K++Y P+ T V CW LT P GSD
Sbjct: 135 SSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCWALTEPNHGSD 177
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 31.1 bits (67), Expect = 0.80
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = -1
Query: 438 PKERHRPTKLRDRNPSERHEQQRLSGLQERS--QRN-EPRARPPQS---GPERECVQERG 277
P+ R R R R+P R + S +ERS +RN PR P +S P+R+ V+E+
Sbjct: 30 PRRRERSPAARSRSPRRRSPVKSTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQV 89
Query: 276 PCARRR*IQSEHQQRSRQ 223
++ +S R R+
Sbjct: 90 RSPKQSWSRSPSPARKRE 107
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/69 (28%), Positives = 24/69 (34%)
Frame = -1
Query: 390 ERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQRSRQCA*Y 211
ER E R SG R PP+ + R P RR ++S R R
Sbjct: 6 ERREHSRRSGRSRSRSPARDRGSPPRRRERSPAARSRSP-RRRSPVKSTSSHRERSPVRR 64
Query: 210 RQIPRESTV 184
PR S V
Sbjct: 65 NGSPRRSPV 73
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 199 KREYCPTTLSPTRVSCWLLTSPVWGSD 119
K++Y P+ + CW LT P +GSD
Sbjct: 128 KQKYLPSLTQFRTIGCWALTEPDYGSD 154
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQ 313
S ER + RDR+P +H + R G ERS R+ R+R P+
Sbjct: 204 SEHERRGLSHERDRSPYMQHSRSRSRGRDERS-RSRSRSRSPR 245
>05_04_0131 +
18290201-18290650,18291474-18291626,18291950-18292042,
18292285-18292313,18292702-18292795,18292941-18293153
Length = 343
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 426 HRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERE 295
HR T+++ + SE E R S +E+ + N+P PP + E E
Sbjct: 83 HRSTEVQPADDSEPEETSR-STTEEKKEENKPDETPPSTVTEPE 125
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 28.7 bits (61), Expect = 4.2
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = -2
Query: 461 SDGSVSVAQRSAIGQ-RSSVTVTQVSAMSNNG*VGYRSDHSGMSQGRDHRRV---GQNGS 294
S GS+S + RS Q SV T+ +N RSD G S HRR G G
Sbjct: 135 SAGSLSSSSRSISRQLHRSVPKTRKDGGTNGSNARMRSDSGGNSGANVHRRADLQGPTGR 194
Query: 293 VYKSGVLAHDGVESRVSISSVVDS 222
+L H +S + +S
Sbjct: 195 FVSQSLLRHRSRNQEEPVSHLENS 218
>09_04_0506 - 18188785-18190599
Length = 604
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 390 ERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQRSR 226
ER ++ SG +R + E PP PER ER R + ++R R
Sbjct: 481 ERPPEREWSGASDRRREREKDLPPPPDWPERRHRDERDAGRERERERDRDRERER 535
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = -1
Query: 438 PKERHRPTKLRDRNPSERHEQQRLSGLQERS--QRN-EPRARPPQS---GPERECVQER 280
P R R R R+P R + S +ERS +RN PR P +S P+R+ V+E+
Sbjct: 243 PARRERSPAPRSRSPRRRSPVKTTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQ 301
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +1
Query: 94 TTPASPTACQTPTPATSRA--STRP 162
TTP PT+C +PT +TS + +TRP
Sbjct: 137 TTPWLPTSCSSPTSSTSPSARATRP 161
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPS--ERHEQQ-----RLSGLQERSQRNEPRARPP 316
SP+ R RP+ RD PS E H + R+ RSQ + R R P
Sbjct: 302 SPRHRMRPSHYRDNTPSRGEMHHHRDNTPSRVDSSPRRSQHEDFRDRSP 350
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 103 ASPTACQTPTPATSRASTRPASVT 174
A+ AC T T AT+R++TRP T
Sbjct: 60 ATAVACTTTTTATTRSATRPRKRT 83
>08_02_0377 +
16481232-16481361,16482501-16482547,16482634-16482711,
16482826-16482896,16483005-16483086
Length = 135
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 138 DVKSQHETRVGDSVVGQYSLLESDGTKRTV--DYAADAHSGFNAV--VRKDPALVHTPVL 305
D++ +SV+ L+S+ + DY +G++ + V+K P LVH PV+
Sbjct: 37 DIEENTRVTAVESVMQALVFLDSEHDVNMIVSDYCMPEMTGYDLLMEVKKSPRLVHLPVI 96
Query: 306 AHSA 317
S+
Sbjct: 97 IASS 100
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = -1
Query: 402 RNPSERHEQQRLSGLQERS--QR--NEPRARPPQSG--PERECVQERGPCAR 265
+ PSE + R+SG + RS QR PR PP G P R R P R
Sbjct: 122 KKPSEMRSRDRISGSRGRSYDQRYSRSPRYSPPPRGRSPYRSPSYSRSPSPR 173
>07_01_0543 + 4008439-4008808,4009209-4009274,4009409-4009584
Length = 203
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 106 SPTACQTPTPATSRASTRPASV 171
SPTA TP PATS+ TRP V
Sbjct: 158 SPTATATP-PATSQTQTRPQVV 178
>06_01_0234 - 1784498-1784770
Length = 90
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 402 RNPSERHEQQRLSGLQERSQRNEPRARPP 316
R PSE+ ++ S +R +R PR PP
Sbjct: 41 RQPSEQQQRGEGSSPSQREERRRPREAPP 69
>06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 67 PLTLARFMATTPASPTACQTPTPATSRASTRPASVTA**DSTLS 198
PL+ A F TPA+ + Q P P + +P+S A +S+ S
Sbjct: 1302 PLSGATFFVPTPATVASEQIPDPTVNVHQDQPSSTIALRESSAS 1345
>03_06_0533 + 34565062-34565439
Length = 125
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +2
Query: 182 RTVLSLGI*RY*AHCRLRC*CSLWIQRRRAQGPRSCTHSRSGPLCGGRA 328
R + G+ R A RL C W+ RRR R R G L GG A
Sbjct: 66 RRAAATGLRRLRARLRL---CFAWVSRRRNIHRRGARFGRYGRLSGGAA 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,800,219
Number of Sequences: 37544
Number of extensions: 219602
Number of successful extensions: 1099
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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