Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H06
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 0.94
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.94
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 30 1.2
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 30 1.2
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 30 1.2
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 29 2.2
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 29 2.9
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 29 2.9
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 29 2.9
AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical ... 29 2.9
AC006772-2|AAF60609.2| 341|Caenorhabditis elegans Hypothetical ... 29 2.9
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 3.8
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 3.8
Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical pr... 28 5.0
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 28 5.0
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 28 5.0
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 28 5.0
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 28 5.0
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z75542-1|CAA99859.1| 141|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 28 6.6
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 6.6
U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical p... 28 6.6
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 28 6.6
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 27 8.7
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 27 8.7
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 27 8.7
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 27 8.7
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 27 8.7
AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical ... 27 8.7
AC024869-4|ABB51173.1| 285|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.7 bits (66), Expect = 0.94
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEP-RARPPQSGP-ERECVQERGPCA 268
SP + P R R+PS+ + R S+ P R R P + P R+ Q R
Sbjct: 442 SPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPR 501
Query: 267 RRR*IQSEHQQRS 229
RRR S + RS
Sbjct: 502 RRRSPSSSSRSRS 514
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRAR-PPQSGPERECVQERGPCAR 265
SP + P R+ P+ R S +R + R++ PP R Q + P R
Sbjct: 393 SPSKSRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPR 452
Query: 264 RR*IQSEHQQRSRQ 223
RR S+ Q R+
Sbjct: 453 RRRSPSKSPQAPRR 466
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = -1
Query: 435 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR 259
+ R P++ + P + + R +R+ ++ P P+R + + P ARRR
Sbjct: 318 RRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRR 376
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 30.7 bits (66), Expect = 0.94
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSG---PERECVQERGPC 271
SP++R R R R ++R+S R R+ PR + +S P R+ P
Sbjct: 99 SPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPP 158
Query: 270 ARRR*IQSEHQQRSRQCA*YRQIPREST 187
A+RR QS + R+ YRQ R +
Sbjct: 159 AKRRRDQSRSKSPPRRN--YRQRQRSGS 184
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARR 262
SP R R R R+ S +R R + + R +S P R+ + R P RR
Sbjct: 90 SPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRR 149
Query: 261 R 259
+
Sbjct: 150 Q 150
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQ-RNEPRARPPQSGPERECVQERGPCAR 265
SP+ R R + R R P R + R RS+ R+ R+R P R + R P +
Sbjct: 86 SPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRS-ESRSPSPK 144
Query: 264 R 262
R
Sbjct: 145 R 145
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQ-RNEPRARPPQSGPERECVQERGPCAR 265
SP+ R R + R R P R + R RS+ R+ R+R P R + R P +
Sbjct: 86 SPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRS-ESRSPSPK 144
Query: 264 R 262
R
Sbjct: 145 R 145
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQ-RNEPRARPPQSGPERECVQERGPCAR 265
SP+ R R + R R P R + R RS+ R+ R+R P R + R P +
Sbjct: 86 SPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRS-ESRSPSPK 144
Query: 264 R 262
R
Sbjct: 145 R 145
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGP-ERECVQERGPCAR 265
SP R ++ RDR R + R + R R PP+ P R + R P
Sbjct: 82 SPSRERRRSRSRDRGAPRRRSRTRSRDRRRSPPRRRDRRTPPRRSPGRRSPPRSRLPGPE 141
Query: 264 RR 259
RR
Sbjct: 142 RR 143
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +1
Query: 100 PASPTACQ-TPTPATSRASTRP-ASVT 174
P P Q TPTP TS STRP ASVT
Sbjct: 671 PLHPETSQSTPTPTTSARSTRPTASVT 697
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = -1
Query: 435 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 256
+E HR R+ + ++ S +ERS R++ R R ER RG + RR
Sbjct: 139 RESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDRKRSRSRERRRSPPRGTTSDRRR 198
Query: 255 IQSEHQQRSRQ 223
+++ R+
Sbjct: 199 DDERRREKERR 209
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = -1
Query: 435 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 256
+E HR R+ + ++ S +ERS R++ R R ER RG + RR
Sbjct: 265 RESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDRKRSRSRERRRSPPRGTTSDRRR 324
Query: 255 IQSEHQQRSRQ 223
+++ R+
Sbjct: 325 DDERRREKERR 335
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 67 PLTLARFMATTPASPTACQTPTPATSRASTRPASVT 174
P + M TTP PT T TPA ++AS PA+ T
Sbjct: 794 PTVIPSTMPTTPEPPTISSTFTPAATQAS--PATPT 827
>AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical
protein F56A11.6 protein.
Length = 442
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = -1
Query: 441 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARR 262
SP++ H+ + RD+ R ++ R ++R R+ R+R + +RE ++ R
Sbjct: 288 SPRKSHQKSVDRDKT---RSDKDRSRSRKDREDRDRERSRKDREDRDRERSRKEREDRSR 344
Query: 261 R*IQSEHQQRSRQ 223
+ + ++RSR+
Sbjct: 345 KDREDRERERSRK 357
>AC006772-2|AAF60609.2| 341|Caenorhabditis elegans Hypothetical
protein Y46D2A.1 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 94 TTPASPTACQTPTPATSRASTRPAS 168
+TP++P+ +T P+T+R ST P++
Sbjct: 299 STPSTPSTVETTMPSTTRISTTPSA 323
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 64 RPLTLARFMATTPASPTACQTPTPATSRASTRPASVT 174
+P+T R A TPA+P PTP+ S A+ R + T
Sbjct: 35 KPVTTMRTPAATPAAPPT--RPTPSRSSAAPRATAPT 69
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 64 RPLTLARFMATTPASPTACQTPTPATSRASTRPASVT 174
+P+T R A TPA+P PTP+ S A+ R + T
Sbjct: 164 KPVTTMRTPAATPAAPPT--RPTPSRSSAAPRATAPT 198
>Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical
protein F10A3.4 protein.
Length = 569
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 94 TTPASPTACQTPTPATSRASTRPASVT 174
TT + T QTP P T+ +TRPA T
Sbjct: 473 TTLPTTTTTQTPLPTTTILTTRPALTT 499
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 387 RHEQQRLSGLQERSQRNEPRARPPQSGPERECVQER 280
+ +QQ+ Q ++QR++ R R + ERE +ER
Sbjct: 468 QQQQQQQQAAQAQAQRDQERERREREAREREAARER 503
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
protein 27,isoform b protein.
Length = 1124
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 387 RHEQQRLSGLQERSQRNEPRARPPQSGPERECVQER 280
+ +QQ+ Q ++QR++ R R + ERE +ER
Sbjct: 980 QQQQQQQQAAQAQAQRDQERERREREAREREAARER 1015
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
protein 27,isoform a protein.
Length = 1129
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 387 RHEQQRLSGLQERSQRNEPRARPPQSGPERECVQER 280
+ +QQ+ Q ++QR++ R R + ERE +ER
Sbjct: 985 QQQQQQQQAAQAQAQRDQERERREREAREREAARER 1020
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 387 RHEQQRLSGLQERSQRNEPRARPPQSGPERECVQER 280
+ +QQ+ Q ++QR++ R R + ERE +ER
Sbjct: 985 QQQQQQQQAAQAQAQRDQERERREREAREREAARER 1020
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 257 QRRRAQGPRSCTHSRSGPLCGGRALGSFRCDRSCSPLSRCC 379
Q RR R+C P C A ++ D SC SR C
Sbjct: 641 QMRRPHSARACVADEPLPPCMPTASALYQRDASCQDQSRFC 681
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein
F53B6.2a protein.
Length = 1045
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 257 QRRRAQGPRSCTHSRSGPLCGGRALGSFRCDRSCSPLSRCC 379
Q RR R+C P C A ++ D SC SR C
Sbjct: 975 QMRRPHSARACVADEPLPPCMPTASALYQRDASCQDQSRFC 1015
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 79 ARFMATTPAS-PTACQTPTPATSRASTRPASVT 174
A+ T P + PT+ QT TP T+ +T P T
Sbjct: 83 AQIQTTIPTTTPTSTQTTTPTTTTITTTPVPTT 115
>Z75542-1|CAA99859.1| 141|Caenorhabditis elegans Hypothetical
protein F55D12.1 protein.
Length = 141
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -1
Query: 435 KERHRPTK-LRDRNPSERHEQQRLSGLQERSQRNEPRARP-PQSGPERECVQERGPCARR 262
K H P + +R E +R QE+S+ + P PQS P E R C R
Sbjct: 14 KSPHPPQNVISERREFVSCEYRREPLHQEQSRPSSILRNPLPQSHPYEERENARLACEYR 73
Query: 261 R*IQSEHQQ 235
R QSEH Q
Sbjct: 74 RDQQSEHGQ 82
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 67 PLTLARFMATTPASPTACQTPTPATSRASTRPASVT 174
P T + TT +PT T TP T+ ++T + T
Sbjct: 65 PTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTT 100
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 408 RDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPER 298
RDR+ SER E G ++RS PR + P + P R
Sbjct: 101 RDRDRSERREPSSRRGWKDRSGDQTPRFKVPDT-PSR 136
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Frame = +1
Query: 94 TTPASPTAC-QTPTPATSRAST----RPASV 171
T PA+P+A Q PTPA++ AST PASV
Sbjct: 605 TQPATPSASNQPPTPASASASTTLHVEPASV 635
>U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical
protein T20D4.7 protein.
Length = 155
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 126 PHTGDVKSQHETRVGDSVVGQYSLLESDGTKRTVDYAADAHSGFN--AVVRK 275
PH K + T+ G S + +++ DGT+ T D D G N A++ K
Sbjct: 101 PHGNGAKQKLSTKYGVSGIPALIIVKPDGTEITRDGRKDVQMGTNPKAIIAK 152
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 408 RDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPER 298
RDR+ SER E G ++RS PR + P + P R
Sbjct: 101 RDRDRSERREPSSRRGWKDRSGDQTPRFKVPDT-PSR 136
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = -1
Query: 435 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 256
KE + K+R + Q+ L+E S+ +R P +R R P RRR
Sbjct: 485 KEEDQIEKIRKCVDAYYASQEPPENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQ 544
Query: 255 IQSEHQQRS 229
S + RS
Sbjct: 545 RSSSNSSRS 553
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 413 SSVTVTQVSAMSNNG*VGYRSDHSGMSQGRDHR--RVGQNGSVYKSGVLAHDGVE 255
SS+T S+M NN + SG +G+D R NG + G + DG E
Sbjct: 333 SSLTNNIASSMGNNNNKKKTASSSGNEEGKDGRSSSASSNGRGARGGSVLKDGKE 387
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -1
Query: 438 PKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQS-GPERECVQERGPCARR 262
P+E R + R +R +++R S R +R P R + PER Q+R P R
Sbjct: 267 PREDRRRSVERQDQREDRRDRRR-SPEDPRERRRSPEDRTVRRRSPERR-RQQRSPSVER 324
Query: 261 R*IQSEHQQRSRQ 223
R +R R+
Sbjct: 325 RKSPQRRDERRRR 337
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = -1
Query: 435 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 256
KE + K+R + Q+ L+E S+ +R P +R R P RRR
Sbjct: 485 KEEDQIEKIRKCVDAYYASQEPPENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQ 544
Query: 255 IQSEHQQRS 229
S + RS
Sbjct: 545 RSSSNSSRS 553
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 413 SSVTVTQVSAMSNNG*VGYRSDHSGMSQGRDHR--RVGQNGSVYKSGVLAHDGVE 255
SS+T S+M NN + SG +G+D R NG + G + DG E
Sbjct: 333 SSLTNNIASSMGNNNNKKKTASSSGNEEGKDGRSSSASSNGRGARGGSVLKDGKE 387
>AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical
protein Y75B7AL.4a protein.
Length = 1126
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 79 ARFMATTPASPTACQTPTPATSRASTRPASVTA 177
A F +T S + T TP TSR ST A+ A
Sbjct: 1088 AAFSESTSDSALSTPTATPTTSRVSTNDAAAAA 1120
>AC024869-4|ABB51173.1| 285|Caenorhabditis elegans Hypothetical
protein Y75B7AL.4b protein.
Length = 285
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 79 ARFMATTPASPTACQTPTPATSRASTRPASVTA 177
A F +T S + T TP TSR ST A+ A
Sbjct: 247 AAFSESTSDSALSTPTATPTTSRVSTNDAAAAA 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,392,063
Number of Sequences: 27780
Number of extensions: 171876
Number of successful extensions: 986
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -