Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H06
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ... 32 0.38
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 31 0.66
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 30 1.2
At5g58880.1 68418.m07377 hypothetical protein 29 3.5
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 29 3.5
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 28 4.7
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 28 6.2
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 28 6.2
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 28 6.2
At3g09010.1 68416.m01055 protein kinase family protein contains ... 28 6.2
At5g41320.1 68418.m05022 expressed protein 27 8.2
>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
Short-chain acyl CoA oxidase [Arabidopsis thaliana]
GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
dehydrogenase
Length = 436
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 226 TVRLVPSDSKRE-YCPTTLSPTRVSCWLLTSPVWGSD 119
T+ L S++++E Y P+ V+CW LT P GSD
Sbjct: 146 TIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSD 182
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 31.1 bits (67), Expect = 0.66
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 441 SPKER--HRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCA 268
SP+ R H P + R R+P RH + G R Q P R P + P A
Sbjct: 271 SPRRRRIHSPFRSRSRSPIRRHRRPTHEG---RRQSPAPSRRRRSPSPPARRRRSPSPPA 327
Query: 267 RRR*IQSEHQQRSR 226
RRR S +R R
Sbjct: 328 RRRRSPSPPARRHR 341
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -1
Query: 435 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 256
KER + + R+R ER ++R + S+RN R R + G E + RRR
Sbjct: 166 KERVKERERREREDGERDRREREK--ERGSRRNRERERSREVGNEESDDDVKRDLKRRRK 223
Query: 255 IQSEHQQRSRQ 223
E +++ R+
Sbjct: 224 EGGERKEKERE 234
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = -1
Query: 435 KERHRPTKLRDRNPSERHEQQRLSG-----LQERSQRNEPRARPPQSGPERECVQERGPC 271
KE+ R + RD++ +R ++R S ++E +R++ R + G RE ++RG
Sbjct: 75 KEKERERRRRDKDRVKRRSERRKSSDSEDDVEEEDERDKRRVNEKERG-HREHERDRGKD 133
Query: 270 ARRR*IQSEHQQRSRQ 223
+R + E + + R+
Sbjct: 134 RKRDREREERKDKERE 149
>At5g58880.1 68418.m07377 hypothetical protein
Length = 1088
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -1
Query: 411 LRDRNPSER--HEQQRLSGLQERSQRNEPRARPPQSGPERECV 289
+RD +R H+ + SG+ + + +EP + P++ P+++CV
Sbjct: 540 VRDEESRKRMSHQYESRSGIGSKEENSEPSTK-PEAKPDQDCV 581
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 67 PLTLARFMATTPASPTACQTPTPATSRASTRPA 165
P++ TTP++PT T +PA + +T PA
Sbjct: 24 PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPA 56
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 408 RDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSEHQQRS 229
R E H + L L+ + ++NE R R ERE +E R R + E QR
Sbjct: 370 RGSETRENHGPKDLEKLEIQRKKNEERMRKEMERNERERRKEEERLMRERIKEEERLQRE 429
Query: 228 RQ 223
++
Sbjct: 430 QR 431
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = -1
Query: 435 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 256
+ER P R R +++ RLS +R R R P++G R +G R
Sbjct: 216 RERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275
Query: 255 IQSEHQQRSRQCA*YRQIPRES 190
E ++ SR Y + RES
Sbjct: 276 PPYEKRRESRSPPPYEK-RRES 296
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = -1
Query: 435 KERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR* 256
+ER P R R +++ RLS +R R R P++G R +G R
Sbjct: 216 RERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275
Query: 255 IQSEHQQRSRQCA*YRQIPRES 190
E ++ SR Y + RES
Sbjct: 276 PPYEKRRESRSPPPYEK-RRES 296
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 27.9 bits (59), Expect = 6.2
Identities = 24/82 (29%), Positives = 34/82 (41%)
Frame = -1
Query: 438 PKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR 259
P R+ + RDR PS R +R + RS PR R P R R P RR
Sbjct: 443 PDRRNFQDRNRDRYPSNRSYSERSPRGRFRSP---PRRRSPPRYNRRRRSTSRSPDGYRR 499
Query: 258 *IQSEHQQRSRQCA*YRQIPRE 193
++ + +S + Q PR+
Sbjct: 500 RLRDGSRSQSPRHRSRSQSPRK 521
>At3g09010.1 68416.m01055 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 393
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -2
Query: 347 HSGMSQGRDHR----RVGQNGSVYKSGVLAHD-GVESRVSISSVVDSALS 213
+ G+++GR+HR RVGQ GS +S D G S V S +S +S
Sbjct: 334 YRGVNRGRNHRGIGLRVGQGGSSQESSSTQRDKGKSSAVPQGSTSNSNIS 383
>At5g41320.1 68418.m05022 expressed protein
Length = 515
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = -1
Query: 423 RPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGPCARRR*IQSE 244
RP K R + E++ +E ++ +E +++P +SG E +E+ +
Sbjct: 159 RPVKKRMTKKKKEEEEKMKKKEEEETKESEKQSKPGESGLEMYIPEEKSS-------EIA 211
Query: 243 HQQRSRQC 220
H R R+C
Sbjct: 212 HNGRDREC 219
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,939,020
Number of Sequences: 28952
Number of extensions: 160883
Number of successful extensions: 669
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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