Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H05
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645...    28   5.5  
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170...    27   9.7  
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550...    27   9.7  

>05_02_0083 +
           6450694-6450766,6451391-6451560,6451633-6451704,
           6451893-6452043,6452709-6452817,6452906-6453023,
           6453214-6453361,6453520-6453768,6454209-6454334,
           6454474-6454574,6454728-6454802,6455160-6455219
          Length = 483

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 70  LAVGHPKPTQQQWRMMKRIRPNRPKSTASALRCASA 177
           LA+G  K   + ++ +KRI PN P +T     C  A
Sbjct: 91  LAMGKFKEALKDFQQVKRISPNDPDATRKLKECEKA 126


>08_01_0213 -
           1703682-1703696,1703824-1703919,1704033-1704104,
           1704372-1704444,1704508-1704710,1705058-1706330,
           1706800-1706868,1706940-1707088,1707275-1707487,
           1708385-1708669
          Length = 815

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 18  SNCGSCWLNHLVGPSSXSCSRXP*TNTTTMADDEANKAKQAEIDRK 155
           S  G C+   +  P+S  CSR P    +++ D    +AKQA++  K
Sbjct: 55  SGGGGCYGYRVTPPTSGGCSRPPRAPLSSV-DSPYVRAKQAQVIEK 99


>03_02_0080 +
           5498638-5498699,5499121-5499190,5499551-5500711,
           5500940-5501029,5501147-5501464
          Length = 566

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 295 NVKLLKGGASSRRGAVNLRTLTTPT 369
           N K  KGGAS+ + A + RT T PT
Sbjct: 504 NGKAKKGGASTPKKAAHRRTTTVPT 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,624
Number of Sequences: 37544
Number of extensions: 199502
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)